Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_634

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_633 and Pf1N1B4_634 overlap by 1 nucleotidesPf1N1B4_634 and Pf1N1B4_635 are separated by 14 nucleotidesPf1N1B4_635 and Pf1N1B4_636 overlap by 11 nucleotides Pf1N1B4_633 - TolA protein, at 730,082 to 731,161 _633 Pf1N1B4_634 - Tol biopolymer transport system, TolR protein, at 731,161 to 731,622 _634 Pf1N1B4_635 - MotA/TolQ/ExbB proton channel family protein, at 731,637 to 732,332 _635 Pf1N1B4_636 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 732,322 to 732,789 _636 Position (kb) 731 732Strain fitness (log2 ratio) -1 0 1at 731.639 kb on - strandat 731.639 kb on - strandat 732.392 kb on - strand, within Pf1N1B4_636at 732.392 kb on - strand, within Pf1N1B4_636at 732.392 kb on - strand, within Pf1N1B4_636at 732.392 kb on - strand, within Pf1N1B4_636at 732.475 kb on - strand, within Pf1N1B4_636at 732.533 kb on - strand, within Pf1N1B4_636

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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731,639 - -0.3
731,639 - +0.8
732,392 - Pf1N1B4_636 0.15 +1.4
732,392 - Pf1N1B4_636 0.15 -1.6
732,392 - Pf1N1B4_636 0.15 -0.9
732,392 - Pf1N1B4_636 0.15 -0.3
732,475 - Pf1N1B4_636 0.33 +1.5
732,533 - Pf1N1B4_636 0.45 -1.6

Or see this region's nucleotide sequence