Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_633

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_632 and Pf1N1B4_633 are separated by 29 nucleotidesPf1N1B4_633 and Pf1N1B4_634 overlap by 1 nucleotidesPf1N1B4_634 and Pf1N1B4_635 are separated by 14 nucleotides Pf1N1B4_632 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 728,784 to 730,052 _632 Pf1N1B4_633 - TolA protein, at 730,082 to 731,161 _633 Pf1N1B4_634 - Tol biopolymer transport system, TolR protein, at 731,161 to 731,622 _634 Pf1N1B4_635 - MotA/TolQ/ExbB proton channel family protein, at 731,637 to 732,332 _635 Position (kb) 730 731 732Strain fitness (log2 ratio) -2 -1 0 1at 730.092 kb on - strandat 731.639 kb on - strandat 731.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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730,092 - -2.6
731,639 - -0.3
731,639 - +0.8

Or see this region's nucleotide sequence