Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_630 and Pf1N1B4_631 are separated by 81 nucleotides Pf1N1B4_631 and Pf1N1B4_632 are separated by 52 nucleotides Pf1N1B4_632 and Pf1N1B4_633 are separated by 29 nucleotides
Pf1N1B4_630 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 727,388 to 728,152
_630
Pf1N1B4_631 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 728,234 to 728,731
_631
Pf1N1B4_632 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 728,784 to 730,052
_632
Pf1N1B4_633 - TolA protein, at 730,082 to 731,161
_633
Position (kb) 728
729
730
731 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 727.867 kb on + strand, within Pf1N1B4_630 at 727.901 kb on + strand, within Pf1N1B4_630 at 727.902 kb on - strand, within Pf1N1B4_630 at 728.077 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.114 kb on - strand at 728.129 kb on - strand at 728.129 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.205 kb on - strand at 728.235 kb on + strand at 728.236 kb on - strand at 728.236 kb on - strand at 728.236 kb on - strand at 728.236 kb on - strand at 728.236 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.240 kb on - strand at 728.762 kb on - strand at 728.766 kb on - strand at 728.766 kb on - strand at 728.766 kb on - strand at 728.795 kb on - strand at 730.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 727,867 + Pf1N1B4_630 0.63 -0.0 727,901 + Pf1N1B4_630 0.67 -1.6 727,902 - Pf1N1B4_630 0.67 +0.5 728,077 - -1.6 728,114 - -2.6 728,114 - -2.0 728,114 - -2.0 728,114 - -1.6 728,114 - -2.0 728,114 - -1.0 728,114 - -1.6 728,129 - -2.4 728,129 - -1.6 728,205 - -2.0 728,205 - -2.6 728,205 - -3.0 728,205 - -3.8 728,205 - -0.0 728,205 - +1.0 728,235 + -1.6 728,236 - -2.4 728,236 - -1.5 728,236 - -2.0 728,236 - -2.0 728,236 - -1.8 728,240 - -1.8 728,240 - -0.3 728,240 - -1.0 728,240 - -1.5 728,240 - -0.9 728,240 - +1.0 728,240 - -2.0 728,240 - -1.0 728,240 - -2.3 728,240 - -2.3 728,240 - -1.8 728,240 - -0.0 728,762 - -2.4 728,766 - +1.0 728,766 - -1.4 728,766 - +0.3 728,795 - +1.0 730,092 - -2.6
Or see this region's nucleotide sequence