Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_606 and Pf1N1B4_607 are separated by 122 nucleotides Pf1N1B4_607 and Pf1N1B4_608 are separated by 109 nucleotides Pf1N1B4_608 and Pf1N1B4_609 are separated by 164 nucleotides
Pf1N1B4_605 - hypothetical protein, at 698,097 to 698,288
_605
Pf1N1B4_606 - Iron siderophore sensor protein, at 698,220 to 699,128
_606
Pf1N1B4_607 - TonB-dependent hemin , ferrichrome receptor, at 699,251 to 701,812
_607
Pf1N1B4_608 - Heme oxygenase HemO, associated with heme uptake, at 701,922 to 702,530
_608
Pf1N1B4_609 - FIG039061: hypothetical protein related to heme utilization, at 702,695 to 703,090
_609
Position (kb)
699
700
701
702 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 698.635 kb on - strand, within Pf1N1B4_606 at 698.840 kb on + strand, within Pf1N1B4_606 at 698.840 kb on + strand, within Pf1N1B4_606 at 698.974 kb on - strand, within Pf1N1B4_606 at 699.030 kb on - strand, within Pf1N1B4_606 at 699.219 kb on + strand at 699.219 kb on + strand at 699.219 kb on + strand at 699.220 kb on - strand at 699.220 kb on - strand at 699.220 kb on - strand at 699.222 kb on - strand at 699.222 kb on - strand at 699.294 kb on + strand at 699.294 kb on + strand at 699.294 kb on + strand at 699.294 kb on + strand at 699.295 kb on - strand at 699.295 kb on - strand at 699.295 kb on - strand at 699.386 kb on + strand at 699.386 kb on + strand at 699.584 kb on - strand, within Pf1N1B4_607 at 699.737 kb on - strand at 699.813 kb on - strand, within Pf1N1B4_607 at 699.897 kb on - strand, within Pf1N1B4_607 at 699.917 kb on + strand, within Pf1N1B4_607 at 699.917 kb on + strand, within Pf1N1B4_607 at 699.917 kb on + strand, within Pf1N1B4_607 at 699.917 kb on + strand, within Pf1N1B4_607 at 699.917 kb on + strand, within Pf1N1B4_607 at 699.917 kb on + strand, within Pf1N1B4_607 at 699.917 kb on + strand, within Pf1N1B4_607 at 699.917 kb on + strand, within Pf1N1B4_607 at 699.917 kb on + strand at 699.918 kb on - strand at 699.918 kb on - strand at 699.918 kb on - strand, within Pf1N1B4_607 at 699.918 kb on - strand, within Pf1N1B4_607 at 699.918 kb on - strand, within Pf1N1B4_607 at 699.918 kb on - strand, within Pf1N1B4_607 at 699.975 kb on + strand, within Pf1N1B4_607 at 699.976 kb on - strand, within Pf1N1B4_607 at 699.978 kb on - strand, within Pf1N1B4_607 at 700.011 kb on - strand, within Pf1N1B4_607 at 700.011 kb on - strand, within Pf1N1B4_607 at 700.011 kb on - strand, within Pf1N1B4_607 at 700.013 kb on + strand, within Pf1N1B4_607 at 700.013 kb on + strand, within Pf1N1B4_607 at 700.013 kb on + strand, within Pf1N1B4_607 at 700.013 kb on + strand, within Pf1N1B4_607 at 700.014 kb on - strand, within Pf1N1B4_607 at 700.014 kb on - strand, within Pf1N1B4_607 at 700.014 kb on - strand, within Pf1N1B4_607 at 700.014 kb on - strand, within Pf1N1B4_607 at 700.014 kb on - strand, within Pf1N1B4_607 at 700.079 kb on + strand, within Pf1N1B4_607 at 700.284 kb on - strand, within Pf1N1B4_607 at 700.313 kb on + strand at 700.314 kb on - strand, within Pf1N1B4_607 at 700.314 kb on - strand, within Pf1N1B4_607 at 700.322 kb on + strand, within Pf1N1B4_607 at 700.322 kb on + strand, within Pf1N1B4_607 at 700.506 kb on - strand, within Pf1N1B4_607 at 700.544 kb on + strand, within Pf1N1B4_607 at 700.586 kb on + strand, within Pf1N1B4_607 at 700.586 kb on + strand, within Pf1N1B4_607 at 700.586 kb on + strand, within Pf1N1B4_607 at 700.587 kb on - strand at 700.661 kb on - strand, within Pf1N1B4_607 at 700.664 kb on + strand, within Pf1N1B4_607 at 700.665 kb on - strand, within Pf1N1B4_607 at 700.665 kb on - strand, within Pf1N1B4_607 at 700.820 kb on + strand, within Pf1N1B4_607 at 700.820 kb on + strand, within Pf1N1B4_607 at 700.820 kb on + strand, within Pf1N1B4_607 at 700.821 kb on - strand, within Pf1N1B4_607 at 700.821 kb on - strand, within Pf1N1B4_607 at 700.884 kb on - strand, within Pf1N1B4_607 at 700.884 kb on - strand, within Pf1N1B4_607 at 700.890 kb on - strand, within Pf1N1B4_607 at 701.012 kb on + strand, within Pf1N1B4_607 at 701.013 kb on - strand, within Pf1N1B4_607 at 701.013 kb on - strand, within Pf1N1B4_607 at 701.013 kb on - strand, within Pf1N1B4_607 at 701.013 kb on - strand, within Pf1N1B4_607 at 701.030 kb on + strand, within Pf1N1B4_607 at 701.031 kb on - strand, within Pf1N1B4_607 at 701.031 kb on - strand, within Pf1N1B4_607 at 701.031 kb on - strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.087 kb on + strand, within Pf1N1B4_607 at 701.088 kb on - strand at 701.088 kb on - strand, within Pf1N1B4_607 at 701.088 kb on - strand, within Pf1N1B4_607 at 701.088 kb on - strand, within Pf1N1B4_607 at 701.088 kb on - strand, within Pf1N1B4_607 at 701.088 kb on - strand, within Pf1N1B4_607 at 701.165 kb on + strand, within Pf1N1B4_607 at 701.166 kb on - strand, within Pf1N1B4_607 at 701.166 kb on - strand, within Pf1N1B4_607 at 701.166 kb on - strand, within Pf1N1B4_607 at 701.222 kb on + strand, within Pf1N1B4_607 at 701.223 kb on - strand at 701.223 kb on - strand, within Pf1N1B4_607 at 701.223 kb on - strand, within Pf1N1B4_607 at 701.223 kb on - strand, within Pf1N1B4_607 at 701.223 kb on - strand, within Pf1N1B4_607 at 701.223 kb on - strand at 701.232 kb on - strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.378 kb on + strand, within Pf1N1B4_607 at 701.379 kb on - strand, within Pf1N1B4_607 at 701.381 kb on - strand, within Pf1N1B4_607 at 701.400 kb on - strand, within Pf1N1B4_607 at 701.400 kb on - strand, within Pf1N1B4_607 at 701.477 kb on + strand, within Pf1N1B4_607 at 701.492 kb on + strand, within Pf1N1B4_607 at 701.492 kb on + strand, within Pf1N1B4_607 at 701.492 kb on + strand, within Pf1N1B4_607 at 701.493 kb on - strand, within Pf1N1B4_607 at 701.493 kb on - strand, within Pf1N1B4_607 at 701.624 kb on + strand at 701.624 kb on + strand at 701.624 kb on + strand at 701.624 kb on + strand at 701.625 kb on - strand at 701.663 kb on + strand at 701.663 kb on + strand at 701.663 kb on + strand at 701.664 kb on - strand at 701.664 kb on - strand at 701.664 kb on - strand at 701.664 kb on - strand at 701.684 kb on + strand at 701.684 kb on + strand at 701.685 kb on - strand at 701.685 kb on - strand at 702.075 kb on + strand, within Pf1N1B4_608 at 702.076 kb on - strand, within Pf1N1B4_608 at 702.076 kb on - strand, within Pf1N1B4_608 at 702.230 kb on + strand, within Pf1N1B4_608 at 702.487 kb on + strand at 702.487 kb on + strand at 702.488 kb on - strand at 702.504 kb on + strand at 702.604 kb on + strand at 702.682 kb on - strand at 702.741 kb on + strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand at 702.766 kb on - strand, within Pf1N1B4_609 at 702.766 kb on - strand, within Pf1N1B4_609
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 698,635 - Pf1N1B4_606 0.46 -0.6 698,840 + Pf1N1B4_606 0.68 -2.1 698,840 + Pf1N1B4_606 0.68 -0.1 698,974 - Pf1N1B4_606 0.83 -1.1 699,030 - Pf1N1B4_606 0.89 -3.1 699,219 + +0.5 699,219 + -0.1 699,219 + -1.1 699,220 - +0.4 699,220 - -1.1 699,220 - +0.7 699,222 - -0.1 699,222 - -0.1 699,294 + +1.1 699,294 + -1.1 699,294 + +0.1 699,294 + -0.3 699,295 - -0.8 699,295 - -1.6 699,295 - +0.2 699,386 + -1.1 699,386 + -1.1 699,584 - Pf1N1B4_607 0.13 -0.1 699,737 - +1.5 699,813 - Pf1N1B4_607 0.22 -1.6 699,897 - Pf1N1B4_607 0.25 -1.1 699,917 + Pf1N1B4_607 0.26 +1.5 699,917 + Pf1N1B4_607 0.26 -1.1 699,917 + Pf1N1B4_607 0.26 +0.4 699,917 + Pf1N1B4_607 0.26 -0.1 699,917 + Pf1N1B4_607 0.26 -0.1 699,917 + Pf1N1B4_607 0.26 +0.2 699,917 + Pf1N1B4_607 0.26 -1.1 699,917 + Pf1N1B4_607 0.26 -2.4 699,917 + -1.6 699,918 - -0.1 699,918 - +0.4 699,918 - Pf1N1B4_607 0.26 -0.9 699,918 - Pf1N1B4_607 0.26 -2.6 699,918 - Pf1N1B4_607 0.26 +0.1 699,918 - Pf1N1B4_607 0.26 -0.1 699,975 + Pf1N1B4_607 0.28 +0.2 699,976 - Pf1N1B4_607 0.28 -1.6 699,978 - Pf1N1B4_607 0.28 -0.1 700,011 - Pf1N1B4_607 0.30 -1.9 700,011 - Pf1N1B4_607 0.30 +1.7 700,011 - Pf1N1B4_607 0.30 -1.6 700,013 + Pf1N1B4_607 0.30 -0.6 700,013 + Pf1N1B4_607 0.30 -0.5 700,013 + Pf1N1B4_607 0.30 -2.6 700,013 + Pf1N1B4_607 0.30 -1.6 700,014 - Pf1N1B4_607 0.30 -0.1 700,014 - Pf1N1B4_607 0.30 -0.6 700,014 - Pf1N1B4_607 0.30 -1.1 700,014 - Pf1N1B4_607 0.30 -0.5 700,014 - Pf1N1B4_607 0.30 -2.9 700,079 + Pf1N1B4_607 0.32 +1.5 700,284 - Pf1N1B4_607 0.40 +0.9 700,313 + +0.4 700,314 - Pf1N1B4_607 0.41 -1.5 700,314 - Pf1N1B4_607 0.41 +0.1 700,322 + Pf1N1B4_607 0.42 -1.6 700,322 + Pf1N1B4_607 0.42 -0.1 700,506 - Pf1N1B4_607 0.49 -0.1 700,544 + Pf1N1B4_607 0.50 -0.6 700,586 + Pf1N1B4_607 0.52 -0.5 700,586 + Pf1N1B4_607 0.52 -1.6 700,586 + Pf1N1B4_607 0.52 -3.6 700,587 - -1.1 700,661 - Pf1N1B4_607 0.55 +0.9 700,664 + Pf1N1B4_607 0.55 -1.6 700,665 - Pf1N1B4_607 0.55 -0.1 700,665 - Pf1N1B4_607 0.55 -1.3 700,820 + Pf1N1B4_607 0.61 -0.1 700,820 + Pf1N1B4_607 0.61 -1.1 700,820 + Pf1N1B4_607 0.61 -0.5 700,821 - Pf1N1B4_607 0.61 -0.4 700,821 - Pf1N1B4_607 0.61 +1.3 700,884 - Pf1N1B4_607 0.64 -1.6 700,884 - Pf1N1B4_607 0.64 +0.9 700,890 - Pf1N1B4_607 0.64 +2.5 701,012 + Pf1N1B4_607 0.69 +1.9 701,013 - Pf1N1B4_607 0.69 +0.9 701,013 - Pf1N1B4_607 0.69 +1.5 701,013 - Pf1N1B4_607 0.69 -1.1 701,013 - Pf1N1B4_607 0.69 -0.6 701,030 + Pf1N1B4_607 0.69 +0.4 701,031 - Pf1N1B4_607 0.69 -0.6 701,031 - Pf1N1B4_607 0.69 +0.8 701,031 - Pf1N1B4_607 0.69 -0.9 701,087 + Pf1N1B4_607 0.72 -0.6 701,087 + Pf1N1B4_607 0.72 -0.1 701,087 + Pf1N1B4_607 0.72 -0.4 701,087 + Pf1N1B4_607 0.72 -0.5 701,087 + Pf1N1B4_607 0.72 -0.8 701,087 + Pf1N1B4_607 0.72 -0.4 701,087 + Pf1N1B4_607 0.72 -0.9 701,088 - -0.1 701,088 - Pf1N1B4_607 0.72 -1.1 701,088 - Pf1N1B4_607 0.72 +1.1 701,088 - Pf1N1B4_607 0.72 -1.1 701,088 - Pf1N1B4_607 0.72 -0.4 701,088 - Pf1N1B4_607 0.72 -0.6 701,165 + Pf1N1B4_607 0.75 -2.4 701,166 - Pf1N1B4_607 0.75 +1.5 701,166 - Pf1N1B4_607 0.75 -0.3 701,166 - Pf1N1B4_607 0.75 -2.9 701,222 + Pf1N1B4_607 0.77 -1.6 701,223 - -0.1 701,223 - Pf1N1B4_607 0.77 +0.4 701,223 - Pf1N1B4_607 0.77 +0.3 701,223 - Pf1N1B4_607 0.77 -0.3 701,223 - Pf1N1B4_607 0.77 -0.1 701,223 - -0.1 701,232 - Pf1N1B4_607 0.77 -0.7 701,378 + Pf1N1B4_607 0.83 +1.9 701,378 + Pf1N1B4_607 0.83 +0.5 701,378 + Pf1N1B4_607 0.83 -3.4 701,378 + Pf1N1B4_607 0.83 +1.2 701,378 + Pf1N1B4_607 0.83 +1.9 701,378 + Pf1N1B4_607 0.83 +0.5 701,379 - Pf1N1B4_607 0.83 -1.1 701,381 - Pf1N1B4_607 0.83 -0.3 701,400 - Pf1N1B4_607 0.84 -0.6 701,400 - Pf1N1B4_607 0.84 +0.4 701,477 + Pf1N1B4_607 0.87 +0.3 701,492 + Pf1N1B4_607 0.87 -0.6 701,492 + Pf1N1B4_607 0.87 +0.4 701,492 + Pf1N1B4_607 0.87 -0.1 701,493 - Pf1N1B4_607 0.88 -2.6 701,493 - Pf1N1B4_607 0.88 -1.6 701,624 + +0.2 701,624 + -1.6 701,624 + +0.3 701,624 + +2.6 701,625 - +0.5 701,663 + -0.2 701,663 + -1.6 701,663 + +2.4 701,664 - +0.4 701,664 - -2.1 701,664 - -0.1 701,664 - +2.3 701,684 + -2.1 701,684 + +0.7 701,685 - -0.6 701,685 - +0.1 702,075 + Pf1N1B4_608 0.25 +3.9 702,076 - Pf1N1B4_608 0.25 -0.6 702,076 - Pf1N1B4_608 0.25 -1.1 702,230 + Pf1N1B4_608 0.51 +0.3 702,487 + -0.6 702,487 + -0.8 702,488 - -0.1 702,504 + -0.1 702,604 + -2.2 702,682 - -1.1 702,741 + Pf1N1B4_609 0.12 -1.1 702,766 - Pf1N1B4_609 0.18 +0.7 702,766 - Pf1N1B4_609 0.18 -0.5 702,766 - Pf1N1B4_609 0.18 -2.4 702,766 - Pf1N1B4_609 0.18 +1.9 702,766 - -0.1 702,766 - Pf1N1B4_609 0.18 +1.5 702,766 - Pf1N1B4_609 0.18 +0.5
Or see this region's nucleotide sequence