Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_607

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_606 and Pf1N1B4_607 are separated by 122 nucleotidesPf1N1B4_607 and Pf1N1B4_608 are separated by 109 nucleotidesPf1N1B4_608 and Pf1N1B4_609 are separated by 164 nucleotides Pf1N1B4_605 - hypothetical protein, at 698,097 to 698,288 _605 Pf1N1B4_606 - Iron siderophore sensor protein, at 698,220 to 699,128 _606 Pf1N1B4_607 - TonB-dependent hemin , ferrichrome receptor, at 699,251 to 701,812 _607 Pf1N1B4_608 - Heme oxygenase HemO, associated with heme uptake, at 701,922 to 702,530 _608 Pf1N1B4_609 - FIG039061: hypothetical protein related to heme utilization, at 702,695 to 703,090 _609 Position (kb) 699 700 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 698.635 kb on - strand, within Pf1N1B4_606at 698.840 kb on + strand, within Pf1N1B4_606at 698.840 kb on + strand, within Pf1N1B4_606at 698.974 kb on - strand, within Pf1N1B4_606at 699.030 kb on - strand, within Pf1N1B4_606at 699.219 kb on + strandat 699.219 kb on + strandat 699.219 kb on + strandat 699.220 kb on - strandat 699.220 kb on - strandat 699.220 kb on - strandat 699.222 kb on - strandat 699.222 kb on - strandat 699.294 kb on + strandat 699.294 kb on + strandat 699.294 kb on + strandat 699.294 kb on + strandat 699.295 kb on - strandat 699.295 kb on - strandat 699.295 kb on - strandat 699.386 kb on + strandat 699.386 kb on + strandat 699.584 kb on - strand, within Pf1N1B4_607at 699.737 kb on - strandat 699.813 kb on - strand, within Pf1N1B4_607at 699.897 kb on - strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strand, within Pf1N1B4_607at 699.917 kb on + strandat 699.918 kb on - strandat 699.918 kb on - strandat 699.918 kb on - strand, within Pf1N1B4_607at 699.918 kb on - strand, within Pf1N1B4_607at 699.918 kb on - strand, within Pf1N1B4_607at 699.918 kb on - strand, within Pf1N1B4_607at 699.975 kb on + strand, within Pf1N1B4_607at 699.976 kb on - strand, within Pf1N1B4_607at 699.978 kb on - strand, within Pf1N1B4_607at 700.011 kb on - strand, within Pf1N1B4_607at 700.011 kb on - strand, within Pf1N1B4_607at 700.011 kb on - strand, within Pf1N1B4_607at 700.013 kb on + strand, within Pf1N1B4_607at 700.013 kb on + strand, within Pf1N1B4_607at 700.013 kb on + strand, within Pf1N1B4_607at 700.013 kb on + strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.014 kb on - strand, within Pf1N1B4_607at 700.079 kb on + strand, within Pf1N1B4_607at 700.284 kb on - strand, within Pf1N1B4_607at 700.313 kb on + strandat 700.314 kb on - strand, within Pf1N1B4_607at 700.314 kb on - strand, within Pf1N1B4_607at 700.322 kb on + strand, within Pf1N1B4_607at 700.322 kb on + strand, within Pf1N1B4_607at 700.506 kb on - strand, within Pf1N1B4_607at 700.544 kb on + strand, within Pf1N1B4_607at 700.586 kb on + strand, within Pf1N1B4_607at 700.586 kb on + strand, within Pf1N1B4_607at 700.586 kb on + strand, within Pf1N1B4_607at 700.587 kb on - strandat 700.661 kb on - strand, within Pf1N1B4_607at 700.664 kb on + strand, within Pf1N1B4_607at 700.665 kb on - strand, within Pf1N1B4_607at 700.665 kb on - strand, within Pf1N1B4_607at 700.820 kb on + strand, within Pf1N1B4_607at 700.820 kb on + strand, within Pf1N1B4_607at 700.820 kb on + strand, within Pf1N1B4_607at 700.821 kb on - strand, within Pf1N1B4_607at 700.821 kb on - strand, within Pf1N1B4_607at 700.884 kb on - strand, within Pf1N1B4_607at 700.884 kb on - strand, within Pf1N1B4_607at 700.890 kb on - strand, within Pf1N1B4_607at 701.012 kb on + strand, within Pf1N1B4_607at 701.013 kb on - strand, within Pf1N1B4_607at 701.013 kb on - strand, within Pf1N1B4_607at 701.013 kb on - strand, within Pf1N1B4_607at 701.013 kb on - strand, within Pf1N1B4_607at 701.030 kb on + strand, within Pf1N1B4_607at 701.031 kb on - strand, within Pf1N1B4_607at 701.031 kb on - strand, within Pf1N1B4_607at 701.031 kb on - strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.087 kb on + strand, within Pf1N1B4_607at 701.088 kb on - strandat 701.088 kb on - strand, within Pf1N1B4_607at 701.088 kb on - strand, within Pf1N1B4_607at 701.088 kb on - strand, within Pf1N1B4_607at 701.088 kb on - strand, within Pf1N1B4_607at 701.088 kb on - strand, within Pf1N1B4_607at 701.165 kb on + strand, within Pf1N1B4_607at 701.166 kb on - strand, within Pf1N1B4_607at 701.166 kb on - strand, within Pf1N1B4_607at 701.166 kb on - strand, within Pf1N1B4_607at 701.222 kb on + strand, within Pf1N1B4_607at 701.223 kb on - strandat 701.223 kb on - strand, within Pf1N1B4_607at 701.223 kb on - strand, within Pf1N1B4_607at 701.223 kb on - strand, within Pf1N1B4_607at 701.223 kb on - strand, within Pf1N1B4_607at 701.223 kb on - strandat 701.232 kb on - strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.378 kb on + strand, within Pf1N1B4_607at 701.379 kb on - strand, within Pf1N1B4_607at 701.381 kb on - strand, within Pf1N1B4_607at 701.400 kb on - strand, within Pf1N1B4_607at 701.400 kb on - strand, within Pf1N1B4_607at 701.477 kb on + strand, within Pf1N1B4_607at 701.492 kb on + strand, within Pf1N1B4_607at 701.492 kb on + strand, within Pf1N1B4_607at 701.492 kb on + strand, within Pf1N1B4_607at 701.493 kb on - strand, within Pf1N1B4_607at 701.493 kb on - strand, within Pf1N1B4_607at 701.624 kb on + strandat 701.624 kb on + strandat 701.624 kb on + strandat 701.624 kb on + strandat 701.625 kb on - strandat 701.663 kb on + strandat 701.663 kb on + strandat 701.663 kb on + strandat 701.664 kb on - strandat 701.664 kb on - strandat 701.664 kb on - strandat 701.664 kb on - strandat 701.684 kb on + strandat 701.684 kb on + strandat 701.685 kb on - strandat 701.685 kb on - strandat 702.075 kb on + strand, within Pf1N1B4_608at 702.076 kb on - strand, within Pf1N1B4_608at 702.076 kb on - strand, within Pf1N1B4_608at 702.230 kb on + strand, within Pf1N1B4_608at 702.487 kb on + strandat 702.487 kb on + strandat 702.488 kb on - strandat 702.504 kb on + strandat 702.604 kb on + strandat 702.682 kb on - strandat 702.741 kb on + strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strandat 702.766 kb on - strand, within Pf1N1B4_609at 702.766 kb on - strand, within Pf1N1B4_609

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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698,635 - Pf1N1B4_606 0.46 -0.6
698,840 + Pf1N1B4_606 0.68 -2.1
698,840 + Pf1N1B4_606 0.68 -0.1
698,974 - Pf1N1B4_606 0.83 -1.1
699,030 - Pf1N1B4_606 0.89 -3.1
699,219 + +0.5
699,219 + -0.1
699,219 + -1.1
699,220 - +0.4
699,220 - -1.1
699,220 - +0.7
699,222 - -0.1
699,222 - -0.1
699,294 + +1.1
699,294 + -1.1
699,294 + +0.1
699,294 + -0.3
699,295 - -0.8
699,295 - -1.6
699,295 - +0.2
699,386 + -1.1
699,386 + -1.1
699,584 - Pf1N1B4_607 0.13 -0.1
699,737 - +1.5
699,813 - Pf1N1B4_607 0.22 -1.6
699,897 - Pf1N1B4_607 0.25 -1.1
699,917 + Pf1N1B4_607 0.26 +1.5
699,917 + Pf1N1B4_607 0.26 -1.1
699,917 + Pf1N1B4_607 0.26 +0.4
699,917 + Pf1N1B4_607 0.26 -0.1
699,917 + Pf1N1B4_607 0.26 -0.1
699,917 + Pf1N1B4_607 0.26 +0.2
699,917 + Pf1N1B4_607 0.26 -1.1
699,917 + Pf1N1B4_607 0.26 -2.4
699,917 + -1.6
699,918 - -0.1
699,918 - +0.4
699,918 - Pf1N1B4_607 0.26 -0.9
699,918 - Pf1N1B4_607 0.26 -2.6
699,918 - Pf1N1B4_607 0.26 +0.1
699,918 - Pf1N1B4_607 0.26 -0.1
699,975 + Pf1N1B4_607 0.28 +0.2
699,976 - Pf1N1B4_607 0.28 -1.6
699,978 - Pf1N1B4_607 0.28 -0.1
700,011 - Pf1N1B4_607 0.30 -1.9
700,011 - Pf1N1B4_607 0.30 +1.7
700,011 - Pf1N1B4_607 0.30 -1.6
700,013 + Pf1N1B4_607 0.30 -0.6
700,013 + Pf1N1B4_607 0.30 -0.5
700,013 + Pf1N1B4_607 0.30 -2.6
700,013 + Pf1N1B4_607 0.30 -1.6
700,014 - Pf1N1B4_607 0.30 -0.1
700,014 - Pf1N1B4_607 0.30 -0.6
700,014 - Pf1N1B4_607 0.30 -1.1
700,014 - Pf1N1B4_607 0.30 -0.5
700,014 - Pf1N1B4_607 0.30 -2.9
700,079 + Pf1N1B4_607 0.32 +1.5
700,284 - Pf1N1B4_607 0.40 +0.9
700,313 + +0.4
700,314 - Pf1N1B4_607 0.41 -1.5
700,314 - Pf1N1B4_607 0.41 +0.1
700,322 + Pf1N1B4_607 0.42 -1.6
700,322 + Pf1N1B4_607 0.42 -0.1
700,506 - Pf1N1B4_607 0.49 -0.1
700,544 + Pf1N1B4_607 0.50 -0.6
700,586 + Pf1N1B4_607 0.52 -0.5
700,586 + Pf1N1B4_607 0.52 -1.6
700,586 + Pf1N1B4_607 0.52 -3.6
700,587 - -1.1
700,661 - Pf1N1B4_607 0.55 +0.9
700,664 + Pf1N1B4_607 0.55 -1.6
700,665 - Pf1N1B4_607 0.55 -0.1
700,665 - Pf1N1B4_607 0.55 -1.3
700,820 + Pf1N1B4_607 0.61 -0.1
700,820 + Pf1N1B4_607 0.61 -1.1
700,820 + Pf1N1B4_607 0.61 -0.5
700,821 - Pf1N1B4_607 0.61 -0.4
700,821 - Pf1N1B4_607 0.61 +1.3
700,884 - Pf1N1B4_607 0.64 -1.6
700,884 - Pf1N1B4_607 0.64 +0.9
700,890 - Pf1N1B4_607 0.64 +2.5
701,012 + Pf1N1B4_607 0.69 +1.9
701,013 - Pf1N1B4_607 0.69 +0.9
701,013 - Pf1N1B4_607 0.69 +1.5
701,013 - Pf1N1B4_607 0.69 -1.1
701,013 - Pf1N1B4_607 0.69 -0.6
701,030 + Pf1N1B4_607 0.69 +0.4
701,031 - Pf1N1B4_607 0.69 -0.6
701,031 - Pf1N1B4_607 0.69 +0.8
701,031 - Pf1N1B4_607 0.69 -0.9
701,087 + Pf1N1B4_607 0.72 -0.6
701,087 + Pf1N1B4_607 0.72 -0.1
701,087 + Pf1N1B4_607 0.72 -0.4
701,087 + Pf1N1B4_607 0.72 -0.5
701,087 + Pf1N1B4_607 0.72 -0.8
701,087 + Pf1N1B4_607 0.72 -0.4
701,087 + Pf1N1B4_607 0.72 -0.9
701,088 - -0.1
701,088 - Pf1N1B4_607 0.72 -1.1
701,088 - Pf1N1B4_607 0.72 +1.1
701,088 - Pf1N1B4_607 0.72 -1.1
701,088 - Pf1N1B4_607 0.72 -0.4
701,088 - Pf1N1B4_607 0.72 -0.6
701,165 + Pf1N1B4_607 0.75 -2.4
701,166 - Pf1N1B4_607 0.75 +1.5
701,166 - Pf1N1B4_607 0.75 -0.3
701,166 - Pf1N1B4_607 0.75 -2.9
701,222 + Pf1N1B4_607 0.77 -1.6
701,223 - -0.1
701,223 - Pf1N1B4_607 0.77 +0.4
701,223 - Pf1N1B4_607 0.77 +0.3
701,223 - Pf1N1B4_607 0.77 -0.3
701,223 - Pf1N1B4_607 0.77 -0.1
701,223 - -0.1
701,232 - Pf1N1B4_607 0.77 -0.7
701,378 + Pf1N1B4_607 0.83 +1.9
701,378 + Pf1N1B4_607 0.83 +0.5
701,378 + Pf1N1B4_607 0.83 -3.4
701,378 + Pf1N1B4_607 0.83 +1.2
701,378 + Pf1N1B4_607 0.83 +1.9
701,378 + Pf1N1B4_607 0.83 +0.5
701,379 - Pf1N1B4_607 0.83 -1.1
701,381 - Pf1N1B4_607 0.83 -0.3
701,400 - Pf1N1B4_607 0.84 -0.6
701,400 - Pf1N1B4_607 0.84 +0.4
701,477 + Pf1N1B4_607 0.87 +0.3
701,492 + Pf1N1B4_607 0.87 -0.6
701,492 + Pf1N1B4_607 0.87 +0.4
701,492 + Pf1N1B4_607 0.87 -0.1
701,493 - Pf1N1B4_607 0.88 -2.6
701,493 - Pf1N1B4_607 0.88 -1.6
701,624 + +0.2
701,624 + -1.6
701,624 + +0.3
701,624 + +2.6
701,625 - +0.5
701,663 + -0.2
701,663 + -1.6
701,663 + +2.4
701,664 - +0.4
701,664 - -2.1
701,664 - -0.1
701,664 - +2.3
701,684 + -2.1
701,684 + +0.7
701,685 - -0.6
701,685 - +0.1
702,075 + Pf1N1B4_608 0.25 +3.9
702,076 - Pf1N1B4_608 0.25 -0.6
702,076 - Pf1N1B4_608 0.25 -1.1
702,230 + Pf1N1B4_608 0.51 +0.3
702,487 + -0.6
702,487 + -0.8
702,488 - -0.1
702,504 + -0.1
702,604 + -2.2
702,682 - -1.1
702,741 + Pf1N1B4_609 0.12 -1.1
702,766 - Pf1N1B4_609 0.18 +0.7
702,766 - Pf1N1B4_609 0.18 -0.5
702,766 - Pf1N1B4_609 0.18 -2.4
702,766 - Pf1N1B4_609 0.18 +1.9
702,766 - -0.1
702,766 - Pf1N1B4_609 0.18 +1.5
702,766 - Pf1N1B4_609 0.18 +0.5

Or see this region's nucleotide sequence