Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_578 and Pf1N1B4_579 are separated by 83 nucleotides Pf1N1B4_579 and Pf1N1B4_580 are separated by 11 nucleotides Pf1N1B4_580 and Pf1N1B4_581 overlap by 14 nucleotides
Pf1N1B4_578 - enoyl-CoA hydratase, R-specific, at 670,949 to 671,419
_578
Pf1N1B4_579 - Membrane fusion component of tripartite multidrug resistance system, at 671,503 to 672,363
_579
Pf1N1B4_580 - FIG00953813: hypothetical protein, at 672,375 to 672,581
_580
Pf1N1B4_581 - membrane protein, putative, at 672,568 to 674,556
_581
Position (kb) 672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 671.422 kb on + strand at 671.422 kb on + strand at 671.423 kb on - strand at 671.458 kb on + strand at 671.458 kb on + strand at 671.665 kb on - strand, within Pf1N1B4_579 at 671.665 kb on - strand, within Pf1N1B4_579 at 671.789 kb on + strand, within Pf1N1B4_579 at 671.801 kb on + strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand, within Pf1N1B4_579 at 671.802 kb on - strand at 671.852 kb on + strand, within Pf1N1B4_579 at 671.852 kb on + strand, within Pf1N1B4_579 at 671.852 kb on + strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.853 kb on - strand, within Pf1N1B4_579 at 671.856 kb on + strand, within Pf1N1B4_579 at 671.856 kb on + strand, within Pf1N1B4_579 at 671.857 kb on - strand, within Pf1N1B4_579 at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.281 kb on + strand at 672.282 kb on - strand at 672.282 kb on - strand at 672.282 kb on - strand at 672.282 kb on - strand at 672.284 kb on + strand at 672.350 kb on - strand at 672.357 kb on + strand at 672.357 kb on + strand at 672.357 kb on + strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.358 kb on - strand at 672.364 kb on - strand at 672.364 kb on - strand at 672.377 kb on - strand at 672.378 kb on + strand at 672.412 kb on - strand, within Pf1N1B4_580 at 672.412 kb on - strand, within Pf1N1B4_580 at 672.412 kb on - strand, within Pf1N1B4_580 at 672.412 kb on - strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.421 kb on + strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 672.422 kb on - strand, within Pf1N1B4_580 at 673.051 kb on - strand, within Pf1N1B4_581 at 673.078 kb on + strand, within Pf1N1B4_581 at 673.174 kb on - strand at 673.174 kb on - strand, within Pf1N1B4_581 at 673.174 kb on - strand, within Pf1N1B4_581
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 671,422 + +0.6 671,422 + +0.8 671,423 - -0.0 671,458 + -0.0 671,458 + +0.2 671,665 - Pf1N1B4_579 0.19 -1.1 671,665 - Pf1N1B4_579 0.19 -2.8 671,789 + Pf1N1B4_579 0.33 -2.4 671,801 + Pf1N1B4_579 0.35 +0.2 671,802 - Pf1N1B4_579 0.35 -2.0 671,802 - Pf1N1B4_579 0.35 -1.6 671,802 - Pf1N1B4_579 0.35 -1.6 671,802 - Pf1N1B4_579 0.35 -1.0 671,802 - -1.0 671,852 + Pf1N1B4_579 0.41 +1.0 671,852 + Pf1N1B4_579 0.41 -2.4 671,852 + Pf1N1B4_579 0.41 -1.6 671,853 - Pf1N1B4_579 0.41 -1.4 671,853 - Pf1N1B4_579 0.41 -2.4 671,853 - Pf1N1B4_579 0.41 -0.0 671,853 - Pf1N1B4_579 0.41 -0.6 671,853 - Pf1N1B4_579 0.41 +0.2 671,856 + Pf1N1B4_579 0.41 -1.0 671,856 + Pf1N1B4_579 0.41 -1.0 671,857 - Pf1N1B4_579 0.41 -0.6 672,281 + -1.0 672,281 + -0.6 672,281 + -1.0 672,281 + -2.6 672,281 + -1.4 672,281 + -0.0 672,281 + -1.0 672,281 + -1.4 672,281 + -1.6 672,281 + -2.5 672,282 - -2.6 672,282 - -2.4 672,282 - -2.6 672,282 - -1.6 672,284 + -2.4 672,350 - -2.6 672,357 + -2.0 672,357 + -1.3 672,357 + +0.7 672,358 - -1.0 672,358 - -0.0 672,358 - -0.8 672,358 - -0.6 672,358 - -3.7 672,358 - -1.6 672,358 - -1.0 672,358 - -1.0 672,358 - -1.0 672,358 - -3.0 672,364 - -0.0 672,364 - -1.6 672,377 - +0.5 672,378 + -2.4 672,412 - Pf1N1B4_580 0.18 -1.9 672,412 - Pf1N1B4_580 0.18 -1.0 672,412 - Pf1N1B4_580 0.18 -1.0 672,412 - Pf1N1B4_580 0.18 -1.6 672,421 + Pf1N1B4_580 0.22 -2.4 672,421 + Pf1N1B4_580 0.22 -2.4 672,421 + -0.0 672,421 + Pf1N1B4_580 0.22 -1.6 672,421 + Pf1N1B4_580 0.22 -1.6 672,421 + Pf1N1B4_580 0.22 -0.5 672,422 - Pf1N1B4_580 0.23 -1.0 672,422 - Pf1N1B4_580 0.23 -1.0 672,422 - Pf1N1B4_580 0.23 -1.0 672,422 - Pf1N1B4_580 0.23 -1.0 672,422 - Pf1N1B4_580 0.23 -1.6 672,422 - Pf1N1B4_580 0.23 -1.6 673,051 - Pf1N1B4_581 0.24 -0.0 673,078 + Pf1N1B4_581 0.26 -2.8 673,174 - -1.0 673,174 - Pf1N1B4_581 0.30 +1.0 673,174 - Pf1N1B4_581 0.30 -2.8
Or see this region's nucleotide sequence