Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5124 and Pf1N1B4_5125 are separated by 639 nucleotides Pf1N1B4_5125 and Pf1N1B4_5126 are separated by 2 nucleotides
Pf1N1B4_5124 - two component transcriptional regulator, LuxR family, at 5,700,301 to 5,700,918
_5124
Pf1N1B4_5125 - Type I secretion outer membrane protein, TolC precursor, at 5,701,558 to 5,702,937
_5125
Pf1N1B4_5126 - HlyD family secretion protein, at 5,702,940 to 5,704,253
_5126
Position (kb) 5701
5702
5703 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5700.574 kb on + strand, within Pf1N1B4_5124 at 5700.575 kb on - strand at 5700.576 kb on + strand, within Pf1N1B4_5124 at 5700.577 kb on - strand at 5700.890 kb on + strand at 5700.891 kb on - strand at 5700.994 kb on + strand at 5700.995 kb on - strand at 5701.045 kb on + strand at 5701.046 kb on - strand at 5701.048 kb on - strand at 5702.009 kb on + strand at 5702.042 kb on + strand, within Pf1N1B4_5125 at 5702.396 kb on + strand, within Pf1N1B4_5125 at 5702.576 kb on + strand, within Pf1N1B4_5125 at 5702.600 kb on + strand, within Pf1N1B4_5125 at 5702.600 kb on + strand, within Pf1N1B4_5125 at 5702.600 kb on + strand, within Pf1N1B4_5125 at 5702.600 kb on + strand, within Pf1N1B4_5125 at 5702.601 kb on - strand, within Pf1N1B4_5125 at 5702.606 kb on + strand, within Pf1N1B4_5125 at 5702.606 kb on + strand at 5702.617 kb on + strand, within Pf1N1B4_5125 at 5702.643 kb on - strand at 5702.765 kb on + strand, within Pf1N1B4_5125 at 5702.765 kb on + strand, within Pf1N1B4_5125 at 5702.765 kb on + strand, within Pf1N1B4_5125 at 5702.766 kb on - strand, within Pf1N1B4_5125 at 5702.807 kb on + strand at 5702.808 kb on - strand at 5702.808 kb on - strand at 5702.808 kb on - strand at 5703.027 kb on + strand at 5703.028 kb on - strand at 5703.110 kb on - strand, within Pf1N1B4_5126 at 5703.110 kb on - strand, within Pf1N1B4_5126 at 5703.112 kb on + strand, within Pf1N1B4_5126 at 5703.113 kb on - strand at 5703.395 kb on + strand, within Pf1N1B4_5126 at 5703.442 kb on + strand, within Pf1N1B4_5126 at 5703.442 kb on + strand, within Pf1N1B4_5126 at 5703.443 kb on - strand, within Pf1N1B4_5126 at 5703.510 kb on + strand, within Pf1N1B4_5126 at 5703.510 kb on + strand, within Pf1N1B4_5126 at 5703.511 kb on - strand, within Pf1N1B4_5126 at 5703.554 kb on + strand, within Pf1N1B4_5126 at 5703.807 kb on + strand, within Pf1N1B4_5126 at 5703.807 kb on + strand, within Pf1N1B4_5126 at 5703.861 kb on + strand, within Pf1N1B4_5126
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 5,700,574 + Pf1N1B4_5124 0.44 +0.7 5,700,575 - -0.3 5,700,576 + Pf1N1B4_5124 0.44 -0.3 5,700,577 - -0.9 5,700,890 + +0.1 5,700,891 - -0.9 5,700,994 + -0.9 5,700,995 - -2.2 5,701,045 + -1.5 5,701,046 - +0.1 5,701,048 - -1.2 5,702,009 + -0.9 5,702,042 + Pf1N1B4_5125 0.35 +0.5 5,702,396 + Pf1N1B4_5125 0.61 +0.5 5,702,576 + Pf1N1B4_5125 0.74 -0.9 5,702,600 + Pf1N1B4_5125 0.76 -1.5 5,702,600 + Pf1N1B4_5125 0.76 -0.9 5,702,600 + Pf1N1B4_5125 0.76 -0.4 5,702,600 + Pf1N1B4_5125 0.76 -0.2 5,702,601 - Pf1N1B4_5125 0.76 -1.5 5,702,606 + Pf1N1B4_5125 0.76 -0.5 5,702,606 + -0.9 5,702,617 + Pf1N1B4_5125 0.77 +0.5 5,702,643 - -0.9 5,702,765 + Pf1N1B4_5125 0.87 -0.9 5,702,765 + Pf1N1B4_5125 0.87 -1.9 5,702,765 + Pf1N1B4_5125 0.87 +1.5 5,702,766 - Pf1N1B4_5125 0.88 +1.9 5,702,807 + -0.6 5,702,808 - -0.2 5,702,808 - -0.7 5,702,808 - +1.1 5,703,027 + +0.1 5,703,028 - +1.3 5,703,110 - Pf1N1B4_5126 0.13 -0.1 5,703,110 - Pf1N1B4_5126 0.13 -1.2 5,703,112 + Pf1N1B4_5126 0.13 -0.9 5,703,113 - +2.1 5,703,395 + Pf1N1B4_5126 0.35 +1.7 5,703,442 + Pf1N1B4_5126 0.38 -0.5 5,703,442 + Pf1N1B4_5126 0.38 -1.5 5,703,443 - Pf1N1B4_5126 0.38 +1.1 5,703,510 + Pf1N1B4_5126 0.43 +2.1 5,703,510 + Pf1N1B4_5126 0.43 -0.4 5,703,511 - Pf1N1B4_5126 0.43 +0.1 5,703,554 + Pf1N1B4_5126 0.47 -1.5 5,703,807 + Pf1N1B4_5126 0.66 -1.5 5,703,807 + Pf1N1B4_5126 0.66 +0.1 5,703,861 + Pf1N1B4_5126 0.70 -0.5
Or see this region's nucleotide sequence