Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4986

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4984 and Pf1N1B4_4985 are separated by 26 nucleotidesPf1N1B4_4985 and Pf1N1B4_4986 are separated by 61 nucleotidesPf1N1B4_4986 and Pf1N1B4_4987 overlap by 18 nucleotidesPf1N1B4_4987 and Pf1N1B4_5235 are separated by 267 nucleotidesPf1N1B4_5235 and Pf1N1B4_4988 are separated by 29 nucleotides Pf1N1B4_4984 - FIG01200701: possible membrane protein, at 5,525,335 to 5,526,807 _4984 Pf1N1B4_4985 - putative exported protein, at 5,526,834 to 5,527,721 _4985 Pf1N1B4_4986 - mannuronan C-5-epimerase, putative, at 5,527,783 to 5,532,615 _4986 Pf1N1B4_4987 - hypothetical protein, at 5,532,598 to 5,532,744 _4987 Pf1N1B4_5235 - tRNA-Lys-CTT, at 5,533,012 to 5,533,083 _5235 Pf1N1B4_4988 - hypothetical protein, at 5,533,113 to 5,535,419 _4988 Position (kb) 5527 5528 5529 5530 5531 5532 5533Strain fitness (log2 ratio) -2 -1 0 1 2at 5527.159 kb on + strand, within Pf1N1B4_4985at 5527.266 kb on + strand, within Pf1N1B4_4985at 5527.266 kb on + strand, within Pf1N1B4_4985at 5527.266 kb on + strand, within Pf1N1B4_4985at 5527.267 kb on - strand, within Pf1N1B4_4985at 5527.267 kb on - strand, within Pf1N1B4_4985at 5527.287 kb on + strand, within Pf1N1B4_4985at 5527.287 kb on + strand, within Pf1N1B4_4985at 5527.287 kb on + strand, within Pf1N1B4_4985at 5527.287 kb on + strand, within Pf1N1B4_4985at 5527.506 kb on + strand, within Pf1N1B4_4985at 5527.507 kb on - strand, within Pf1N1B4_4985at 5527.508 kb on + strand, within Pf1N1B4_4985at 5527.508 kb on + strand, within Pf1N1B4_4985at 5527.508 kb on + strand, within Pf1N1B4_4985at 5527.508 kb on + strand, within Pf1N1B4_4985at 5527.509 kb on - strand, within Pf1N1B4_4985at 5527.512 kb on + strand, within Pf1N1B4_4985at 5527.513 kb on - strand, within Pf1N1B4_4985at 5527.513 kb on - strand, within Pf1N1B4_4985at 5527.569 kb on + strand, within Pf1N1B4_4985at 5527.719 kb on + strandat 5527.719 kb on + strandat 5527.719 kb on + strandat 5528.088 kb on - strandat 5528.088 kb on - strandat 5528.172 kb on + strandat 5528.172 kb on + strandat 5528.462 kb on + strand, within Pf1N1B4_4986at 5528.462 kb on + strand, within Pf1N1B4_4986at 5528.463 kb on - strandat 5528.463 kb on - strandat 5528.463 kb on - strand, within Pf1N1B4_4986at 5528.463 kb on - strand, within Pf1N1B4_4986at 5528.490 kb on + strand, within Pf1N1B4_4986at 5528.493 kb on - strandat 5528.582 kb on + strand, within Pf1N1B4_4986at 5528.583 kb on - strand, within Pf1N1B4_4986at 5528.583 kb on - strand, within Pf1N1B4_4986at 5528.583 kb on - strand, within Pf1N1B4_4986at 5528.583 kb on - strand, within Pf1N1B4_4986at 5528.583 kb on - strandat 5528.585 kb on + strand, within Pf1N1B4_4986at 5528.585 kb on + strand, within Pf1N1B4_4986at 5528.585 kb on + strand, within Pf1N1B4_4986at 5528.585 kb on + strand, within Pf1N1B4_4986at 5528.586 kb on - strand, within Pf1N1B4_4986at 5528.586 kb on - strand, within Pf1N1B4_4986at 5528.586 kb on - strand, within Pf1N1B4_4986at 5528.586 kb on - strand, within Pf1N1B4_4986at 5528.586 kb on - strand, within Pf1N1B4_4986at 5528.586 kb on - strandat 5528.834 kb on + strandat 5528.834 kb on + strand, within Pf1N1B4_4986at 5528.834 kb on + strandat 5528.835 kb on - strand, within Pf1N1B4_4986at 5528.835 kb on - strand, within Pf1N1B4_4986at 5529.026 kb on + strand, within Pf1N1B4_4986at 5529.026 kb on + strand, within Pf1N1B4_4986at 5529.197 kb on + strand, within Pf1N1B4_4986at 5529.291 kb on - strandat 5529.291 kb on - strand, within Pf1N1B4_4986at 5529.351 kb on + strand, within Pf1N1B4_4986at 5529.352 kb on - strand, within Pf1N1B4_4986at 5529.353 kb on + strand, within Pf1N1B4_4986at 5529.370 kb on + strand, within Pf1N1B4_4986at 5529.371 kb on - strand, within Pf1N1B4_4986at 5529.821 kb on + strand, within Pf1N1B4_4986at 5529.821 kb on + strand, within Pf1N1B4_4986at 5529.884 kb on + strand, within Pf1N1B4_4986at 5529.884 kb on + strand, within Pf1N1B4_4986at 5529.884 kb on + strand, within Pf1N1B4_4986at 5529.884 kb on + strand, within Pf1N1B4_4986at 5529.885 kb on - strand, within Pf1N1B4_4986at 5529.885 kb on - strand, within Pf1N1B4_4986at 5529.917 kb on + strandat 5529.917 kb on + strand, within Pf1N1B4_4986at 5529.917 kb on + strand, within Pf1N1B4_4986at 5529.917 kb on + strand, within Pf1N1B4_4986at 5529.918 kb on - strand, within Pf1N1B4_4986at 5529.989 kb on - strand, within Pf1N1B4_4986at 5530.001 kb on + strand, within Pf1N1B4_4986at 5530.276 kb on - strand, within Pf1N1B4_4986at 5530.326 kb on - strand, within Pf1N1B4_4986at 5530.326 kb on - strand, within Pf1N1B4_4986at 5530.430 kb on + strand, within Pf1N1B4_4986at 5530.601 kb on + strand, within Pf1N1B4_4986at 5530.664 kb on + strand, within Pf1N1B4_4986at 5530.665 kb on - strand, within Pf1N1B4_4986at 5530.665 kb on - strand, within Pf1N1B4_4986at 5530.698 kb on - strand, within Pf1N1B4_4986at 5530.817 kb on + strand, within Pf1N1B4_4986at 5530.817 kb on + strand, within Pf1N1B4_4986at 5530.817 kb on + strand, within Pf1N1B4_4986at 5531.123 kb on + strand, within Pf1N1B4_4986at 5531.147 kb on + strandat 5531.147 kb on + strand, within Pf1N1B4_4986at 5531.495 kb on + strand, within Pf1N1B4_4986at 5531.495 kb on + strand, within Pf1N1B4_4986at 5531.495 kb on + strand, within Pf1N1B4_4986at 5531.496 kb on - strand, within Pf1N1B4_4986at 5531.496 kb on - strand, within Pf1N1B4_4986at 5531.510 kb on + strand, within Pf1N1B4_4986at 5531.666 kb on + strandat 5531.696 kb on + strand, within Pf1N1B4_4986at 5531.696 kb on + strand, within Pf1N1B4_4986at 5531.697 kb on - strand, within Pf1N1B4_4986at 5531.784 kb on - strand, within Pf1N1B4_4986at 5532.425 kb on + strandat 5532.425 kb on + strandat 5532.485 kb on + strandat 5532.485 kb on + strandat 5532.485 kb on + strandat 5532.486 kb on - strandat 5532.486 kb on - strandat 5532.486 kb on - strandat 5532.486 kb on - strandat 5532.501 kb on + strandat 5532.503 kb on + strandat 5532.503 kb on + strandat 5532.503 kb on + strandat 5532.503 kb on + strandat 5532.504 kb on - strandat 5532.504 kb on - strandat 5532.504 kb on - strandat 5532.504 kb on - strandat 5532.893 kb on + strandat 5532.927 kb on + strandat 5533.088 kb on + strandat 5533.088 kb on + strandat 5533.092 kb on + strandat 5533.092 kb on + strandat 5533.093 kb on - strandat 5533.154 kb on - strandat 5533.287 kb on + strandat 5533.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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5,527,159 + Pf1N1B4_4985 0.37 -0.9
5,527,266 + Pf1N1B4_4985 0.49 +0.7
5,527,266 + Pf1N1B4_4985 0.49 -0.9
5,527,266 + Pf1N1B4_4985 0.49 -0.9
5,527,267 - Pf1N1B4_4985 0.49 +0.1
5,527,267 - Pf1N1B4_4985 0.49 -0.1
5,527,287 + Pf1N1B4_4985 0.51 -1.5
5,527,287 + Pf1N1B4_4985 0.51 +0.1
5,527,287 + Pf1N1B4_4985 0.51 -0.9
5,527,287 + Pf1N1B4_4985 0.51 +0.1
5,527,506 + Pf1N1B4_4985 0.76 -1.9
5,527,507 - Pf1N1B4_4985 0.76 -1.5
5,527,508 + Pf1N1B4_4985 0.76 -0.5
5,527,508 + Pf1N1B4_4985 0.76 -2.5
5,527,508 + Pf1N1B4_4985 0.76 -0.9
5,527,508 + Pf1N1B4_4985 0.76 +0.1
5,527,509 - Pf1N1B4_4985 0.76 +1.1
5,527,512 + Pf1N1B4_4985 0.76 -0.1
5,527,513 - Pf1N1B4_4985 0.76 -0.3
5,527,513 - Pf1N1B4_4985 0.76 +0.1
5,527,569 + Pf1N1B4_4985 0.83 -0.5
5,527,719 + -0.9
5,527,719 + +1.8
5,527,719 + -0.5
5,528,088 - -0.3
5,528,088 - -1.2
5,528,172 + -1.5
5,528,172 + +0.1
5,528,462 + Pf1N1B4_4986 0.14 +0.1
5,528,462 + Pf1N1B4_4986 0.14 -0.9
5,528,463 - +0.1
5,528,463 - +0.1
5,528,463 - Pf1N1B4_4986 0.14 -0.9
5,528,463 - Pf1N1B4_4986 0.14 -1.5
5,528,490 + Pf1N1B4_4986 0.15 -0.2
5,528,493 - +0.1
5,528,582 + Pf1N1B4_4986 0.17 +2.1
5,528,583 - Pf1N1B4_4986 0.17 -1.9
5,528,583 - Pf1N1B4_4986 0.17 -1.5
5,528,583 - Pf1N1B4_4986 0.17 +0.1
5,528,583 - Pf1N1B4_4986 0.17 +0.1
5,528,583 - +1.1
5,528,585 + Pf1N1B4_4986 0.17 -0.4
5,528,585 + Pf1N1B4_4986 0.17 -0.9
5,528,585 + Pf1N1B4_4986 0.17 -1.5
5,528,585 + Pf1N1B4_4986 0.17 -0.9
5,528,586 - Pf1N1B4_4986 0.17 +1.1
5,528,586 - Pf1N1B4_4986 0.17 -1.5
5,528,586 - Pf1N1B4_4986 0.17 +1.1
5,528,586 - Pf1N1B4_4986 0.17 -1.9
5,528,586 - Pf1N1B4_4986 0.17 +0.8
5,528,586 - -1.5
5,528,834 + -0.9
5,528,834 + Pf1N1B4_4986 0.22 +1.7
5,528,834 + +1.7
5,528,835 - Pf1N1B4_4986 0.22 -0.9
5,528,835 - Pf1N1B4_4986 0.22 -1.5
5,529,026 + Pf1N1B4_4986 0.26 +0.1
5,529,026 + Pf1N1B4_4986 0.26 -1.5
5,529,197 + Pf1N1B4_4986 0.29 -1.5
5,529,291 - -0.9
5,529,291 - Pf1N1B4_4986 0.31 +0.4
5,529,351 + Pf1N1B4_4986 0.32 -1.5
5,529,352 - Pf1N1B4_4986 0.32 +1.1
5,529,353 + Pf1N1B4_4986 0.32 +1.2
5,529,370 + Pf1N1B4_4986 0.33 +1.9
5,529,371 - Pf1N1B4_4986 0.33 -1.9
5,529,821 + Pf1N1B4_4986 0.42 +1.7
5,529,821 + Pf1N1B4_4986 0.42 +1.1
5,529,884 + Pf1N1B4_4986 0.43 +1.4
5,529,884 + Pf1N1B4_4986 0.43 -1.2
5,529,884 + Pf1N1B4_4986 0.43 -1.3
5,529,884 + Pf1N1B4_4986 0.43 +0.1
5,529,885 - Pf1N1B4_4986 0.43 -0.5
5,529,885 - Pf1N1B4_4986 0.43 +0.5
5,529,917 + -0.5
5,529,917 + Pf1N1B4_4986 0.44 -0.5
5,529,917 + Pf1N1B4_4986 0.44 +0.9
5,529,917 + Pf1N1B4_4986 0.44 +0.1
5,529,918 - Pf1N1B4_4986 0.44 -2.2
5,529,989 - Pf1N1B4_4986 0.46 -0.7
5,530,001 + Pf1N1B4_4986 0.46 +2.4
5,530,276 - Pf1N1B4_4986 0.52 -0.9
5,530,326 - Pf1N1B4_4986 0.53 +0.1
5,530,326 - Pf1N1B4_4986 0.53 -0.7
5,530,430 + Pf1N1B4_4986 0.55 +1.9
5,530,601 + Pf1N1B4_4986 0.58 -1.9
5,530,664 + Pf1N1B4_4986 0.60 -1.9
5,530,665 - Pf1N1B4_4986 0.60 -1.9
5,530,665 - Pf1N1B4_4986 0.60 +0.1
5,530,698 - Pf1N1B4_4986 0.60 -1.5
5,530,817 + Pf1N1B4_4986 0.63 -0.9
5,530,817 + Pf1N1B4_4986 0.63 -1.2
5,530,817 + Pf1N1B4_4986 0.63 -1.1
5,531,123 + Pf1N1B4_4986 0.69 +2.4
5,531,147 + +1.1
5,531,147 + Pf1N1B4_4986 0.70 -2.2
5,531,495 + Pf1N1B4_4986 0.77 +2.4
5,531,495 + Pf1N1B4_4986 0.77 +1.9
5,531,495 + Pf1N1B4_4986 0.77 -0.7
5,531,496 - Pf1N1B4_4986 0.77 +1.4
5,531,496 - Pf1N1B4_4986 0.77 -0.9
5,531,510 + Pf1N1B4_4986 0.77 -0.3
5,531,666 + -1.5
5,531,696 + Pf1N1B4_4986 0.81 -0.9
5,531,696 + Pf1N1B4_4986 0.81 -1.9
5,531,697 - Pf1N1B4_4986 0.81 -1.1
5,531,784 - Pf1N1B4_4986 0.83 +0.6
5,532,425 + +0.7
5,532,425 + +1.1
5,532,485 + +0.3
5,532,485 + +0.2
5,532,485 + +0.7
5,532,486 - -0.9
5,532,486 - +0.6
5,532,486 - -1.9
5,532,486 - -1.5
5,532,501 + -2.7
5,532,503 + -1.5
5,532,503 + +0.1
5,532,503 + +0.4
5,532,503 + +1.1
5,532,504 - -2.2
5,532,504 - +0.1
5,532,504 - +0.1
5,532,504 - -0.9
5,532,893 + -0.9
5,532,927 + -0.1
5,533,088 + -1.3
5,533,088 + +0.1
5,533,092 + +0.1
5,533,092 + -0.4
5,533,093 - +0.1
5,533,154 - -0.9
5,533,287 + -0.3
5,533,287 + +2.4

Or see this region's nucleotide sequence