Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_487

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_486 and Pf1N1B4_487 are separated by 119 nucleotidesPf1N1B4_487 and Pf1N1B4_488 are separated by 263 nucleotides Pf1N1B4_486 - Tricarboxylate porin OpdH, at 577,105 to 578,346 _486 Pf1N1B4_487 - Sialic acid transporter (permease) NanT, at 578,466 to 579,761 _487 Pf1N1B4_488 - Cyn operon transcriptional activator, at 580,025 to 580,972 _488 Position (kb) 578 579 580Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 577.514 kb on + strand, within Pf1N1B4_486at 577.514 kb on + strand, within Pf1N1B4_486at 577.514 kb on + strand, within Pf1N1B4_486at 577.514 kb on + strand, within Pf1N1B4_486at 577.515 kb on - strand, within Pf1N1B4_486at 577.518 kb on + strand, within Pf1N1B4_486at 577.518 kb on + strand, within Pf1N1B4_486at 577.518 kb on + strand, within Pf1N1B4_486at 577.518 kb on + strand, within Pf1N1B4_486at 577.658 kb on + strand, within Pf1N1B4_486at 577.658 kb on + strandat 577.658 kb on + strand, within Pf1N1B4_486at 577.658 kb on + strand, within Pf1N1B4_486at 577.662 kb on + strandat 577.781 kb on + strand, within Pf1N1B4_486at 577.782 kb on - strand, within Pf1N1B4_486at 578.071 kb on - strand, within Pf1N1B4_486at 578.071 kb on - strand, within Pf1N1B4_486at 578.122 kb on - strand, within Pf1N1B4_486at 578.122 kb on - strand, within Pf1N1B4_486at 578.124 kb on - strand, within Pf1N1B4_486at 578.210 kb on + strand, within Pf1N1B4_486at 578.211 kb on - strand, within Pf1N1B4_486at 578.211 kb on - strand, within Pf1N1B4_486at 578.239 kb on - strandat 578.315 kb on + strandat 578.315 kb on + strandat 578.315 kb on + strandat 578.315 kb on + strandat 578.315 kb on + strandat 578.316 kb on - strandat 578.316 kb on - strandat 578.339 kb on + strandat 578.340 kb on - strandat 578.340 kb on - strandat 578.340 kb on - strandat 578.416 kb on + strandat 578.635 kb on + strand, within Pf1N1B4_487at 578.635 kb on + strand, within Pf1N1B4_487at 578.635 kb on + strand, within Pf1N1B4_487at 578.636 kb on - strand, within Pf1N1B4_487at 578.783 kb on - strandat 578.872 kb on + strand, within Pf1N1B4_487at 578.873 kb on - strand, within Pf1N1B4_487at 578.881 kb on + strand, within Pf1N1B4_487at 578.881 kb on + strand, within Pf1N1B4_487at 578.881 kb on + strandat 578.881 kb on + strand, within Pf1N1B4_487at 578.881 kb on + strand, within Pf1N1B4_487at 578.881 kb on + strand, within Pf1N1B4_487at 578.882 kb on - strand, within Pf1N1B4_487at 578.882 kb on - strandat 578.882 kb on - strand, within Pf1N1B4_487at 578.954 kb on - strand, within Pf1N1B4_487at 578.983 kb on + strand, within Pf1N1B4_487at 579.030 kb on - strand, within Pf1N1B4_487at 579.030 kb on - strand, within Pf1N1B4_487at 579.032 kb on + strand, within Pf1N1B4_487at 579.032 kb on + strand, within Pf1N1B4_487at 579.032 kb on + strand, within Pf1N1B4_487at 579.033 kb on - strand, within Pf1N1B4_487at 579.033 kb on - strandat 579.033 kb on - strand, within Pf1N1B4_487at 579.033 kb on - strand, within Pf1N1B4_487at 579.238 kb on + strand, within Pf1N1B4_487at 579.239 kb on - strand, within Pf1N1B4_487at 579.406 kb on + strand, within Pf1N1B4_487at 579.407 kb on - strandat 579.407 kb on - strand, within Pf1N1B4_487at 579.498 kb on + strand, within Pf1N1B4_487at 579.499 kb on - strand, within Pf1N1B4_487at 579.807 kb on - strandat 579.913 kb on + strandat 579.914 kb on - strandat 579.920 kb on - strandat 579.957 kb on - strandat 579.963 kb on + strandat 579.963 kb on + strandat 579.963 kb on + strandat 579.964 kb on - strandat 579.964 kb on - strandat 579.964 kb on - strandat 579.964 kb on - strandat 580.118 kb on - strandat 580.224 kb on - strand, within Pf1N1B4_488at 580.509 kb on - strand, within Pf1N1B4_488at 580.544 kb on + strand, within Pf1N1B4_488at 580.545 kb on - strand, within Pf1N1B4_488at 580.545 kb on - strand, within Pf1N1B4_488at 580.545 kb on - strand, within Pf1N1B4_488at 580.545 kb on - strand, within Pf1N1B4_488at 580.545 kb on - strand, within Pf1N1B4_488at 580.556 kb on + strand, within Pf1N1B4_488at 580.629 kb on + strand, within Pf1N1B4_488at 580.629 kb on + strand, within Pf1N1B4_488at 580.629 kb on + strand, within Pf1N1B4_488at 580.630 kb on - strand, within Pf1N1B4_488at 580.630 kb on - strand, within Pf1N1B4_488at 580.630 kb on - strand, within Pf1N1B4_488

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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577,514 + Pf1N1B4_486 0.33 -0.0
577,514 + Pf1N1B4_486 0.33 -1.6
577,514 + Pf1N1B4_486 0.33 -1.6
577,514 + Pf1N1B4_486 0.33 -0.4
577,515 - Pf1N1B4_486 0.33 -1.0
577,518 + Pf1N1B4_486 0.33 +1.8
577,518 + Pf1N1B4_486 0.33 -1.3
577,518 + Pf1N1B4_486 0.33 -0.3
577,518 + Pf1N1B4_486 0.33 -1.6
577,658 + Pf1N1B4_486 0.45 +0.6
577,658 + -2.3
577,658 + Pf1N1B4_486 0.45 +2.6
577,658 + Pf1N1B4_486 0.45 +3.0
577,662 + -0.0
577,781 + Pf1N1B4_486 0.54 -0.8
577,782 - Pf1N1B4_486 0.55 +0.2
578,071 - Pf1N1B4_486 0.78 +2.8
578,071 - Pf1N1B4_486 0.78 +1.0
578,122 - Pf1N1B4_486 0.82 -1.0
578,122 - Pf1N1B4_486 0.82 +0.7
578,124 - Pf1N1B4_486 0.82 -1.0
578,210 + Pf1N1B4_486 0.89 +1.2
578,211 - Pf1N1B4_486 0.89 -1.3
578,211 - Pf1N1B4_486 0.89 -0.0
578,239 - +0.3
578,315 + -0.3
578,315 + +0.2
578,315 + +0.2
578,315 + -0.0
578,315 + -1.5
578,316 - +0.6
578,316 - -0.0
578,339 + +1.2
578,340 - -0.4
578,340 - -1.6
578,340 - +0.6
578,416 + +0.3
578,635 + Pf1N1B4_487 0.13 -0.6
578,635 + Pf1N1B4_487 0.13 +2.2
578,635 + Pf1N1B4_487 0.13 -0.0
578,636 - Pf1N1B4_487 0.13 -0.0
578,783 - +1.0
578,872 + Pf1N1B4_487 0.31 +1.1
578,873 - Pf1N1B4_487 0.31 +1.0
578,881 + Pf1N1B4_487 0.32 -1.3
578,881 + Pf1N1B4_487 0.32 +1.6
578,881 + +2.6
578,881 + Pf1N1B4_487 0.32 +0.3
578,881 + Pf1N1B4_487 0.32 +2.0
578,881 + Pf1N1B4_487 0.32 +3.5
578,882 - Pf1N1B4_487 0.32 +2.3
578,882 - -1.0
578,882 - Pf1N1B4_487 0.32 -0.0
578,954 - Pf1N1B4_487 0.38 +1.0
578,983 + Pf1N1B4_487 0.40 -1.0
579,030 - Pf1N1B4_487 0.44 -0.3
579,030 - Pf1N1B4_487 0.44 -2.2
579,032 + Pf1N1B4_487 0.44 +1.0
579,032 + Pf1N1B4_487 0.44 -3.0
579,032 + Pf1N1B4_487 0.44 -2.3
579,033 - Pf1N1B4_487 0.44 +0.6
579,033 - -0.0
579,033 - Pf1N1B4_487 0.44 -0.0
579,033 - Pf1N1B4_487 0.44 +1.0
579,238 + Pf1N1B4_487 0.60 +1.6
579,239 - Pf1N1B4_487 0.60 -0.0
579,406 + Pf1N1B4_487 0.73 -1.6
579,407 - -0.0
579,407 - Pf1N1B4_487 0.73 -0.0
579,498 + Pf1N1B4_487 0.80 -0.4
579,499 - Pf1N1B4_487 0.80 -0.0
579,807 - -1.0
579,913 + -0.3
579,914 - -0.0
579,920 - -0.0
579,957 - -0.0
579,963 + -1.0
579,963 + +2.3
579,963 + +1.0
579,964 - +1.3
579,964 - -2.0
579,964 - -0.3
579,964 - -1.0
580,118 - +0.3
580,224 - Pf1N1B4_488 0.21 -2.3
580,509 - Pf1N1B4_488 0.51 +0.3
580,544 + Pf1N1B4_488 0.55 +1.6
580,545 - Pf1N1B4_488 0.55 -0.0
580,545 - Pf1N1B4_488 0.55 -2.8
580,545 - Pf1N1B4_488 0.55 -0.0
580,545 - Pf1N1B4_488 0.55 -0.0
580,545 - Pf1N1B4_488 0.55 +1.6
580,556 + Pf1N1B4_488 0.56 -2.3
580,629 + Pf1N1B4_488 0.64 -0.6
580,629 + Pf1N1B4_488 0.64 +1.0
580,629 + Pf1N1B4_488 0.64 +1.3
580,630 - Pf1N1B4_488 0.64 -0.4
580,630 - Pf1N1B4_488 0.64 +2.3
580,630 - Pf1N1B4_488 0.64 -1.0

Or see this region's nucleotide sequence