Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4736 and Pf1N1B4_4737 are separated by 1 nucleotides Pf1N1B4_4737 and Pf1N1B4_4738 are separated by 698 nucleotides Pf1N1B4_4738 and Pf1N1B4_4739 overlap by 4 nucleotides Pf1N1B4_4739 and Pf1N1B4_4740 are separated by 231 nucleotides
Pf1N1B4_4736 - Fap amyloid fibril minor component, at 5,234,006 to 5,234,578
_4736
Pf1N1B4_4737 - hypothetical protein, at 5,234,580 to 5,234,801
_4737
Pf1N1B4_4738 - Ribosylnicotinamide kinase (EC 2.7.1.22), at 5,235,500 to 5,236,024
_4738
Pf1N1B4_4739 - Ribosyl nicotinamide transporter, PnuC-like, at 5,236,021 to 5,236,584
_4739
Pf1N1B4_4740 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 5,236,816 to 5,238,450
_4740
Position (kb) 5235
5236
5237 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5234.735 kb on + strand at 5235.233 kb on + strand at 5235.233 kb on + strand at 5235.233 kb on + strand at 5235.234 kb on - strand at 5235.244 kb on + strand at 5235.353 kb on + strand at 5235.353 kb on + strand at 5235.439 kb on + strand at 5235.712 kb on - strand, within Pf1N1B4_4738 at 5235.914 kb on - strand, within Pf1N1B4_4738 at 5235.927 kb on + strand, within Pf1N1B4_4738 at 5236.109 kb on + strand, within Pf1N1B4_4739 at 5236.109 kb on + strand, within Pf1N1B4_4739 at 5236.122 kb on - strand, within Pf1N1B4_4739 at 5236.122 kb on - strand, within Pf1N1B4_4739 at 5236.400 kb on + strand, within Pf1N1B4_4739 at 5236.400 kb on + strand, within Pf1N1B4_4739 at 5236.400 kb on + strand, within Pf1N1B4_4739 at 5236.401 kb on - strand, within Pf1N1B4_4739 at 5236.418 kb on + strand, within Pf1N1B4_4739 at 5236.419 kb on - strand, within Pf1N1B4_4739 at 5236.473 kb on + strand, within Pf1N1B4_4739 at 5236.474 kb on - strand, within Pf1N1B4_4739 at 5236.474 kb on - strand at 5236.474 kb on - strand, within Pf1N1B4_4739 at 5236.474 kb on - strand, within Pf1N1B4_4739 at 5236.475 kb on + strand, within Pf1N1B4_4739 at 5236.476 kb on - strand, within Pf1N1B4_4739 at 5236.756 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 5,234,735 + +1.1 5,235,233 + -1.9 5,235,233 + -0.3 5,235,233 + +0.7 5,235,234 - -2.2 5,235,244 + +0.7 5,235,353 + -0.9 5,235,353 + -3.5 5,235,439 + -0.2 5,235,712 - Pf1N1B4_4738 0.40 -0.9 5,235,914 - Pf1N1B4_4738 0.79 +1.4 5,235,927 + Pf1N1B4_4738 0.81 -1.9 5,236,109 + Pf1N1B4_4739 0.16 -1.2 5,236,109 + Pf1N1B4_4739 0.16 +0.1 5,236,122 - Pf1N1B4_4739 0.18 -0.9 5,236,122 - Pf1N1B4_4739 0.18 +0.1 5,236,400 + Pf1N1B4_4739 0.67 +0.1 5,236,400 + Pf1N1B4_4739 0.67 -0.9 5,236,400 + Pf1N1B4_4739 0.67 -1.9 5,236,401 - Pf1N1B4_4739 0.67 +0.7 5,236,418 + Pf1N1B4_4739 0.70 +1.3 5,236,419 - Pf1N1B4_4739 0.71 +0.3 5,236,473 + Pf1N1B4_4739 0.80 -1.9 5,236,474 - Pf1N1B4_4739 0.80 -0.5 5,236,474 - +0.7 5,236,474 - Pf1N1B4_4739 0.80 -0.0 5,236,474 - Pf1N1B4_4739 0.80 +0.2 5,236,475 + Pf1N1B4_4739 0.80 -0.9 5,236,476 - Pf1N1B4_4739 0.81 +1.1 5,236,756 + -1.5
Or see this region's nucleotide sequence