Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_470 and Pf1N1B4_471 overlap by 1 nucleotides Pf1N1B4_471 and Pf1N1B4_472 overlap by 4 nucleotides Pf1N1B4_472 and Pf1N1B4_473 are separated by 96 nucleotides
Pf1N1B4_470 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 560,919 to 561,929
_470
Pf1N1B4_471 - Biopolymer transport protein ExbD/TolR, at 561,929 to 562,357
_471
Pf1N1B4_472 - MotA/TolQ/ExbB proton channel family protein, at 562,354 to 562,989
_472
Pf1N1B4_473 - DNA internalization-related competence protein ComEC/Rec2, at 563,086 to 565,320
_473
Position (kb) 562
563 Strain fitness (log2 ratio) -2
-1
0
1
2 at 562.363 kb on - strand at 563.022 kb on - strand at 563.022 kb on - strand at 563.022 kb on - strand at 563.026 kb on + strand at 563.026 kb on + strand at 563.026 kb on + strand at 563.026 kb on + strand at 563.027 kb on - strand at 563.027 kb on - strand at 563.027 kb on - strand at 563.027 kb on - strand at 563.606 kb on - strand, within Pf1N1B4_473 at 563.775 kb on - strand, within Pf1N1B4_473
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 562,363 - +2.0 563,022 - -2.0 563,022 - -0.0 563,022 - +2.3 563,026 + +0.6 563,026 + +1.0 563,026 + -0.0 563,026 + -0.0 563,027 - +1.0 563,027 - +0.5 563,027 - +0.4 563,027 - -0.4 563,606 - Pf1N1B4_473 0.23 -1.0 563,775 - Pf1N1B4_473 0.31 -1.4
Or see this region's nucleotide sequence