Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4468 and Pf1N1B4_4469 are separated by 580 nucleotides Pf1N1B4_4469 and Pf1N1B4_4470 are separated by 11 nucleotides Pf1N1B4_4470 and Pf1N1B4_4471 are separated by 8 nucleotides
Pf1N1B4_4468 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 4,930,468 to 4,930,674
_4468
Pf1N1B4_4469 - FIG074102: hypothetical protein, at 4,931,255 to 4,931,530
_4469
Pf1N1B4_4470 - Cobalt-zinc-cadmium resistance protein CzcD, at 4,931,542 to 4,932,459
_4470
Pf1N1B4_4471 - putative cytochrome p450 oxidoreductase, at 4,932,468 to 4,933,574
_4471
Position (kb)
4931
4932
4933 Strain fitness (log2 ratio)
-2
-1
0
1 at 4930.757 kb on + strand at 4930.762 kb on - strand at 4930.902 kb on + strand at 4930.902 kb on + strand at 4930.903 kb on - strand at 4930.906 kb on - strand at 4930.906 kb on - strand at 4931.033 kb on + strand at 4931.039 kb on + strand at 4931.251 kb on - strand at 4931.255 kb on - strand at 4931.255 kb on - strand at 4931.529 kb on - strand at 4931.765 kb on - strand, within Pf1N1B4_4470 at 4931.853 kb on - strand, within Pf1N1B4_4470 at 4932.202 kb on + strand, within Pf1N1B4_4470 at 4932.678 kb on - strand, within Pf1N1B4_4471 at 4932.922 kb on - strand, within Pf1N1B4_4471
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 4,930,757 + +0.7 4,930,762 - -1.1 4,930,902 + -0.1 4,930,902 + +1.5 4,930,903 - +0.7 4,930,906 - -0.1 4,930,906 - +0.5 4,931,033 + +1.5 4,931,039 + +0.7 4,931,251 - -2.1 4,931,255 - +0.5 4,931,255 - +1.5 4,931,529 - +0.5 4,931,765 - Pf1N1B4_4470 0.24 -1.8 4,931,853 - Pf1N1B4_4470 0.34 -2.5 4,932,202 + Pf1N1B4_4470 0.72 -0.1 4,932,678 - Pf1N1B4_4471 0.19 -2.4 4,932,922 - Pf1N1B4_4471 0.41 -1.1
Or see this region's nucleotide sequence