Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4470

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4468 and Pf1N1B4_4469 are separated by 580 nucleotidesPf1N1B4_4469 and Pf1N1B4_4470 are separated by 11 nucleotidesPf1N1B4_4470 and Pf1N1B4_4471 are separated by 8 nucleotides Pf1N1B4_4468 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 4,930,468 to 4,930,674 _4468 Pf1N1B4_4469 - FIG074102: hypothetical protein, at 4,931,255 to 4,931,530 _4469 Pf1N1B4_4470 - Cobalt-zinc-cadmium resistance protein CzcD, at 4,931,542 to 4,932,459 _4470 Pf1N1B4_4471 - putative cytochrome p450 oxidoreductase, at 4,932,468 to 4,933,574 _4471 Position (kb) 4931 4932 4933Strain fitness (log2 ratio) -2 -1 0 1at 4930.757 kb on + strandat 4930.762 kb on - strandat 4930.902 kb on + strandat 4930.902 kb on + strandat 4930.903 kb on - strandat 4930.906 kb on - strandat 4930.906 kb on - strandat 4931.033 kb on + strandat 4931.039 kb on + strandat 4931.251 kb on - strandat 4931.255 kb on - strandat 4931.255 kb on - strandat 4931.529 kb on - strandat 4931.765 kb on - strand, within Pf1N1B4_4470at 4931.853 kb on - strand, within Pf1N1B4_4470at 4932.202 kb on + strand, within Pf1N1B4_4470at 4932.678 kb on - strand, within Pf1N1B4_4471at 4932.922 kb on - strand, within Pf1N1B4_4471

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,930,757 + +0.7
4,930,762 - -1.1
4,930,902 + -0.1
4,930,902 + +1.5
4,930,903 - +0.7
4,930,906 - -0.1
4,930,906 - +0.5
4,931,033 + +1.5
4,931,039 + +0.7
4,931,251 - -2.1
4,931,255 - +0.5
4,931,255 - +1.5
4,931,529 - +0.5
4,931,765 - Pf1N1B4_4470 0.24 -1.8
4,931,853 - Pf1N1B4_4470 0.34 -2.5
4,932,202 + Pf1N1B4_4470 0.72 -0.1
4,932,678 - Pf1N1B4_4471 0.19 -2.4
4,932,922 - Pf1N1B4_4471 0.41 -1.1

Or see this region's nucleotide sequence