Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_44

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_43 and Pf1N1B4_44 are separated by 145 nucleotidesPf1N1B4_44 and Pf1N1B4_45 are separated by 10 nucleotidesPf1N1B4_45 and Pf1N1B4_46 are separated by 55 nucleotides Pf1N1B4_43 - hypothetical protein, at 50,934 to 51,638 _43 Pf1N1B4_44 - Multicopper oxidase, at 51,784 to 53,577 _44 Pf1N1B4_45 - Copper resistance protein B, at 53,588 to 54,478 _45 Pf1N1B4_46 - Copper resistance protein C precursor, at 54,534 to 54,917 _46 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2 3at 50.841 kb on + strandat 50.904 kb on - strandat 50.959 kb on + strandat 50.987 kb on + strandat 50.987 kb on + strandat 50.987 kb on + strandat 51.128 kb on - strandat 51.142 kb on - strand, within Pf1N1B4_43at 51.318 kb on + strand, within Pf1N1B4_43at 51.318 kb on + strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.319 kb on - strand, within Pf1N1B4_43at 51.417 kb on + strand, within Pf1N1B4_43at 51.418 kb on - strandat 51.418 kb on - strand, within Pf1N1B4_43at 51.543 kb on + strand, within Pf1N1B4_43at 51.543 kb on + strand, within Pf1N1B4_43at 51.544 kb on - strand, within Pf1N1B4_43at 51.579 kb on + strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.581 kb on + strandat 51.582 kb on - strandat 51.582 kb on - strandat 51.582 kb on - strandat 51.582 kb on - strandat 51.664 kb on + strandat 51.665 kb on - strandat 51.716 kb on + strandat 51.716 kb on + strandat 51.716 kb on + strandat 51.717 kb on - strandat 51.717 kb on - strandat 51.717 kb on - strandat 51.717 kb on - strandat 51.717 kb on - strandat 52.145 kb on + strand, within Pf1N1B4_44at 52.146 kb on - strand, within Pf1N1B4_44at 52.146 kb on - strand, within Pf1N1B4_44at 52.146 kb on - strand, within Pf1N1B4_44at 52.146 kb on - strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.162 kb on + strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strandat 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.163 kb on - strand, within Pf1N1B4_44at 52.168 kb on + strand, within Pf1N1B4_44at 52.169 kb on - strand, within Pf1N1B4_44at 52.169 kb on - strand, within Pf1N1B4_44at 52.169 kb on - strand, within Pf1N1B4_44at 52.198 kb on + strand, within Pf1N1B4_44at 52.198 kb on + strand, within Pf1N1B4_44at 52.198 kb on + strand, within Pf1N1B4_44at 52.198 kb on + strand, within Pf1N1B4_44at 52.199 kb on - strand, within Pf1N1B4_44at 52.199 kb on - strand, within Pf1N1B4_44at 52.199 kb on - strand, within Pf1N1B4_44at 52.199 kb on - strand, within Pf1N1B4_44at 52.300 kb on + strand, within Pf1N1B4_44at 52.300 kb on + strand, within Pf1N1B4_44at 52.379 kb on - strand, within Pf1N1B4_44at 52.379 kb on - strand, within Pf1N1B4_44at 52.385 kb on - strand, within Pf1N1B4_44at 52.385 kb on - strand, within Pf1N1B4_44at 52.385 kb on - strand, within Pf1N1B4_44at 52.519 kb on + strand, within Pf1N1B4_44at 52.519 kb on + strand, within Pf1N1B4_44at 52.519 kb on + strand, within Pf1N1B4_44at 52.520 kb on - strand, within Pf1N1B4_44at 52.520 kb on - strand, within Pf1N1B4_44at 52.520 kb on - strand, within Pf1N1B4_44at 52.525 kb on + strandat 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strandat 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strand, within Pf1N1B4_44at 52.525 kb on + strand, within Pf1N1B4_44at 52.526 kb on - strand, within Pf1N1B4_44at 52.526 kb on - strand, within Pf1N1B4_44at 52.526 kb on - strand, within Pf1N1B4_44at 52.526 kb on - strand, within Pf1N1B4_44at 52.529 kb on + strand, within Pf1N1B4_44at 52.529 kb on + strand, within Pf1N1B4_44at 52.530 kb on - strand, within Pf1N1B4_44at 52.530 kb on - strand, within Pf1N1B4_44at 52.530 kb on - strand, within Pf1N1B4_44at 52.624 kb on + strand, within Pf1N1B4_44at 52.765 kb on + strandat 52.765 kb on + strand, within Pf1N1B4_44at 52.765 kb on + strand, within Pf1N1B4_44at 52.766 kb on - strand, within Pf1N1B4_44at 52.766 kb on - strand, within Pf1N1B4_44at 53.177 kb on - strand, within Pf1N1B4_44at 53.512 kb on + strandat 53.531 kb on - strandat 53.689 kb on + strand, within Pf1N1B4_45at 53.816 kb on + strandat 53.861 kb on + strand, within Pf1N1B4_45at 53.861 kb on + strand, within Pf1N1B4_45at 53.861 kb on + strandat 53.861 kb on + strandat 53.861 kb on + strand, within Pf1N1B4_45at 53.861 kb on + strandat 53.862 kb on - strandat 53.862 kb on - strand, within Pf1N1B4_45at 53.864 kb on + strand, within Pf1N1B4_45at 53.864 kb on + strand, within Pf1N1B4_45at 53.864 kb on + strand, within Pf1N1B4_45at 53.864 kb on + strand, within Pf1N1B4_45at 54.137 kb on + strand, within Pf1N1B4_45at 54.138 kb on - strand, within Pf1N1B4_45at 54.210 kb on - strand, within Pf1N1B4_45at 54.365 kb on + strandat 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.365 kb on + strand, within Pf1N1B4_45at 54.366 kb on - strand, within Pf1N1B4_45at 54.366 kb on - strand, within Pf1N1B4_45at 54.366 kb on - strand, within Pf1N1B4_45at 54.393 kb on - strandat 54.410 kb on + strandat 54.411 kb on - strandat 54.485 kb on + strandat 54.486 kb on - strandat 54.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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50,841 + +0.5
50,904 - -1.6
50,959 + +1.5
50,987 + +0.4
50,987 + +1.8
50,987 + +0.3
51,128 - +1.5
51,142 - Pf1N1B4_43 0.30 +0.6
51,318 + Pf1N1B4_43 0.54 -0.0
51,318 + Pf1N1B4_43 0.54 +0.5
51,319 - Pf1N1B4_43 0.55 -0.8
51,319 - Pf1N1B4_43 0.55 -0.5
51,319 - Pf1N1B4_43 0.55 -0.0
51,319 - Pf1N1B4_43 0.55 -0.0
51,319 - Pf1N1B4_43 0.55 +2.7
51,319 - Pf1N1B4_43 0.55 -0.4
51,319 - Pf1N1B4_43 0.55 -1.3
51,319 - Pf1N1B4_43 0.55 -0.2
51,319 - Pf1N1B4_43 0.55 -1.0
51,319 - Pf1N1B4_43 0.55 -1.0
51,417 + Pf1N1B4_43 0.69 -2.6
51,418 - +1.0
51,418 - Pf1N1B4_43 0.69 -0.0
51,543 + Pf1N1B4_43 0.86 -2.0
51,543 + Pf1N1B4_43 0.86 -1.6
51,544 - Pf1N1B4_43 0.87 +0.4
51,579 + -0.0
51,580 - -1.2
51,580 - -1.6
51,580 - -0.0
51,580 - -0.0
51,580 - +1.5
51,580 - -1.6
51,581 + +0.3
51,582 - +2.4
51,582 - -0.0
51,582 - -0.0
51,582 - -1.6
51,664 + -1.8
51,665 - +1.2
51,716 + -0.0
51,716 + +1.5
51,716 + +0.7
51,717 - -0.6
51,717 - -0.0
51,717 - -0.0
51,717 - +1.0
51,717 - -0.5
52,145 + Pf1N1B4_44 0.20 -1.6
52,146 - Pf1N1B4_44 0.20 +0.5
52,146 - Pf1N1B4_44 0.20 +1.0
52,146 - Pf1N1B4_44 0.20 -1.6
52,146 - Pf1N1B4_44 0.20 -1.0
52,162 + Pf1N1B4_44 0.21 +1.0
52,162 + Pf1N1B4_44 0.21 -0.6
52,162 + Pf1N1B4_44 0.21 -0.1
52,162 + Pf1N1B4_44 0.21 -1.6
52,162 + Pf1N1B4_44 0.21 -1.6
52,163 - Pf1N1B4_44 0.21 +1.0
52,163 - +2.8
52,163 - Pf1N1B4_44 0.21 -0.0
52,163 - Pf1N1B4_44 0.21 -2.0
52,163 - Pf1N1B4_44 0.21 +1.3
52,163 - Pf1N1B4_44 0.21 +1.5
52,163 - Pf1N1B4_44 0.21 -0.6
52,163 - Pf1N1B4_44 0.21 +2.0
52,163 - Pf1N1B4_44 0.21 -0.0
52,163 - Pf1N1B4_44 0.21 +1.3
52,163 - Pf1N1B4_44 0.21 +0.4
52,163 - Pf1N1B4_44 0.21 -0.6
52,163 - Pf1N1B4_44 0.21 +1.0
52,163 - Pf1N1B4_44 0.21 +1.3
52,163 - Pf1N1B4_44 0.21 +1.3
52,163 - Pf1N1B4_44 0.21 -0.8
52,168 + Pf1N1B4_44 0.21 -2.4
52,169 - Pf1N1B4_44 0.21 +0.7
52,169 - Pf1N1B4_44 0.21 +2.0
52,169 - Pf1N1B4_44 0.21 +1.0
52,198 + Pf1N1B4_44 0.23 -1.6
52,198 + Pf1N1B4_44 0.23 -0.6
52,198 + Pf1N1B4_44 0.23 -0.6
52,198 + Pf1N1B4_44 0.23 -0.4
52,199 - Pf1N1B4_44 0.23 -0.3
52,199 - Pf1N1B4_44 0.23 +1.8
52,199 - Pf1N1B4_44 0.23 -1.6
52,199 - Pf1N1B4_44 0.23 -0.6
52,300 + Pf1N1B4_44 0.29 -0.0
52,300 + Pf1N1B4_44 0.29 +0.4
52,379 - Pf1N1B4_44 0.33 +0.2
52,379 - Pf1N1B4_44 0.33 -2.4
52,385 - Pf1N1B4_44 0.34 -1.6
52,385 - Pf1N1B4_44 0.34 +2.0
52,385 - Pf1N1B4_44 0.34 +1.3
52,519 + Pf1N1B4_44 0.41 -2.0
52,519 + Pf1N1B4_44 0.41 +0.2
52,519 + Pf1N1B4_44 0.41 -1.6
52,520 - Pf1N1B4_44 0.41 +1.5
52,520 - Pf1N1B4_44 0.41 -1.6
52,520 - Pf1N1B4_44 0.41 +0.5
52,525 + -0.6
52,525 + Pf1N1B4_44 0.41 -1.0
52,525 + Pf1N1B4_44 0.41 -0.4
52,525 + -0.0
52,525 + Pf1N1B4_44 0.41 -1.0
52,525 + Pf1N1B4_44 0.41 -1.6
52,525 + Pf1N1B4_44 0.41 -0.0
52,525 + Pf1N1B4_44 0.41 +2.1
52,526 - Pf1N1B4_44 0.41 -1.6
52,526 - Pf1N1B4_44 0.41 -0.0
52,526 - Pf1N1B4_44 0.41 -1.0
52,526 - Pf1N1B4_44 0.41 -1.6
52,529 + Pf1N1B4_44 0.42 -0.2
52,529 + Pf1N1B4_44 0.42 -0.0
52,530 - Pf1N1B4_44 0.42 +0.4
52,530 - Pf1N1B4_44 0.42 -2.4
52,530 - Pf1N1B4_44 0.42 +1.0
52,624 + Pf1N1B4_44 0.47 -0.0
52,765 + -1.0
52,765 + Pf1N1B4_44 0.55 -0.4
52,765 + Pf1N1B4_44 0.55 +0.3
52,766 - Pf1N1B4_44 0.55 -0.7
52,766 - Pf1N1B4_44 0.55 -1.6
53,177 - Pf1N1B4_44 0.78 -1.6
53,512 + -1.0
53,531 - +0.7
53,689 + Pf1N1B4_45 0.11 -2.4
53,816 + +1.0
53,861 + Pf1N1B4_45 0.31 -2.0
53,861 + Pf1N1B4_45 0.31 +0.1
53,861 + -1.0
53,861 + +1.0
53,861 + Pf1N1B4_45 0.31 +1.0
53,861 + -1.0
53,862 - +1.0
53,862 - Pf1N1B4_45 0.31 -0.2
53,864 + Pf1N1B4_45 0.31 -0.0
53,864 + Pf1N1B4_45 0.31 +0.4
53,864 + Pf1N1B4_45 0.31 -0.0
53,864 + Pf1N1B4_45 0.31 +0.3
54,137 + Pf1N1B4_45 0.62 -1.3
54,138 - Pf1N1B4_45 0.62 -0.8
54,210 - Pf1N1B4_45 0.70 -0.9
54,365 + -1.0
54,365 + Pf1N1B4_45 0.87 -0.0
54,365 + Pf1N1B4_45 0.87 -2.6
54,365 + Pf1N1B4_45 0.87 -0.8
54,365 + Pf1N1B4_45 0.87 -0.4
54,365 + Pf1N1B4_45 0.87 +1.0
54,365 + Pf1N1B4_45 0.87 -1.6
54,366 - Pf1N1B4_45 0.87 -1.6
54,366 - Pf1N1B4_45 0.87 -0.0
54,366 - Pf1N1B4_45 0.87 +0.6
54,393 - +1.0
54,410 + -1.6
54,411 - +2.0
54,485 + -0.0
54,486 - -1.0
54,514 - -0.0

Or see this region's nucleotide sequence