Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3513

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3512 and Pf1N1B4_3513 are separated by 11 nucleotidesPf1N1B4_3513 and Pf1N1B4_3514 are separated by 247 nucleotides Pf1N1B4_3512 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41), at 3,918,597 to 3,919,817 _3512 Pf1N1B4_3513 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59), at 3,919,829 to 3,920,344 _3513 Pf1N1B4_3514 - Sensor histidine kinase/response regulator, at 3,920,592 to 3,922,493 _3514 Position (kb) 3919 3920 3921Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3920.500 kb on - strandat 3920.537 kb on - strandat 3920.537 kb on - strandat 3920.594 kb on - strandat 3920.594 kb on - strandat 3920.594 kb on - strandat 3920.594 kb on - strandat 3920.594 kb on - strandat 3920.594 kb on - strandat 3920.594 kb on - strandat 3920.594 kb on - strandat 3920.841 kb on + strand, within Pf1N1B4_3514at 3920.842 kb on - strand, within Pf1N1B4_3514at 3920.842 kb on - strand, within Pf1N1B4_3514at 3920.842 kb on - strand, within Pf1N1B4_3514at 3920.876 kb on + strand, within Pf1N1B4_3514at 3920.877 kb on - strand, within Pf1N1B4_3514at 3920.877 kb on - strand, within Pf1N1B4_3514at 3920.877 kb on - strand, within Pf1N1B4_3514at 3920.975 kb on + strand, within Pf1N1B4_3514at 3921.011 kb on + strand, within Pf1N1B4_3514at 3921.011 kb on + strand, within Pf1N1B4_3514at 3921.011 kb on + strand, within Pf1N1B4_3514at 3921.011 kb on + strand, within Pf1N1B4_3514at 3921.012 kb on - strand, within Pf1N1B4_3514at 3921.012 kb on - strand, within Pf1N1B4_3514at 3921.012 kb on - strand, within Pf1N1B4_3514at 3921.012 kb on - strand, within Pf1N1B4_3514at 3921.012 kb on - strand, within Pf1N1B4_3514at 3921.013 kb on + strand, within Pf1N1B4_3514at 3921.013 kb on + strand, within Pf1N1B4_3514at 3921.014 kb on - strand, within Pf1N1B4_3514at 3921.014 kb on - strand, within Pf1N1B4_3514at 3921.014 kb on - strand, within Pf1N1B4_3514at 3921.014 kb on - strand, within Pf1N1B4_3514at 3921.014 kb on - strand, within Pf1N1B4_3514at 3921.014 kb on - strand, within Pf1N1B4_3514at 3921.014 kb on - strand, within Pf1N1B4_3514at 3921.014 kb on - strand, within Pf1N1B4_3514at 3921.152 kb on + strand, within Pf1N1B4_3514at 3921.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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3,920,500 - -0.4
3,920,537 - -2.4
3,920,537 - -1.1
3,920,594 - -0.8
3,920,594 - -0.8
3,920,594 - -0.5
3,920,594 - -0.8
3,920,594 - -1.8
3,920,594 - -0.4
3,920,594 - -2.1
3,920,594 - +0.1
3,920,841 + Pf1N1B4_3514 0.13 -0.1
3,920,842 - Pf1N1B4_3514 0.13 -3.1
3,920,842 - Pf1N1B4_3514 0.13 +0.5
3,920,842 - Pf1N1B4_3514 0.13 -0.3
3,920,876 + Pf1N1B4_3514 0.15 -0.1
3,920,877 - Pf1N1B4_3514 0.15 -1.6
3,920,877 - Pf1N1B4_3514 0.15 -2.0
3,920,877 - Pf1N1B4_3514 0.15 -0.3
3,920,975 + Pf1N1B4_3514 0.20 +0.4
3,921,011 + Pf1N1B4_3514 0.22 -0.5
3,921,011 + Pf1N1B4_3514 0.22 +1.6
3,921,011 + Pf1N1B4_3514 0.22 +1.9
3,921,011 + Pf1N1B4_3514 0.22 +1.4
3,921,012 - Pf1N1B4_3514 0.22 +0.6
3,921,012 - Pf1N1B4_3514 0.22 -0.5
3,921,012 - Pf1N1B4_3514 0.22 +1.1
3,921,012 - Pf1N1B4_3514 0.22 -2.0
3,921,012 - Pf1N1B4_3514 0.22 +0.2
3,921,013 + Pf1N1B4_3514 0.22 +0.9
3,921,013 + Pf1N1B4_3514 0.22 +1.7
3,921,014 - Pf1N1B4_3514 0.22 -0.1
3,921,014 - Pf1N1B4_3514 0.22 -0.9
3,921,014 - Pf1N1B4_3514 0.22 +0.5
3,921,014 - Pf1N1B4_3514 0.22 -1.3
3,921,014 - Pf1N1B4_3514 0.22 -0.8
3,921,014 - Pf1N1B4_3514 0.22 -0.8
3,921,014 - Pf1N1B4_3514 0.22 -1.4
3,921,014 - Pf1N1B4_3514 0.22 -1.8
3,921,152 + Pf1N1B4_3514 0.29 -0.4
3,921,153 - +2.5

Or see this region's nucleotide sequence