Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3512 and Pf1N1B4_3513 are separated by 11 nucleotides Pf1N1B4_3513 and Pf1N1B4_3514 are separated by 247 nucleotides
Pf1N1B4_3512 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41), at 3,918,597 to 3,919,817
_3512
Pf1N1B4_3513 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59), at 3,919,829 to 3,920,344
_3513
Pf1N1B4_3514 - Sensor histidine kinase/response regulator, at 3,920,592 to 3,922,493
_3514
Position (kb)
3919
3920
3921 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3920.500 kb on - strand at 3920.537 kb on - strand at 3920.537 kb on - strand at 3920.594 kb on - strand at 3920.594 kb on - strand at 3920.594 kb on - strand at 3920.594 kb on - strand at 3920.594 kb on - strand at 3920.594 kb on - strand at 3920.594 kb on - strand at 3920.594 kb on - strand at 3920.841 kb on + strand, within Pf1N1B4_3514 at 3920.842 kb on - strand, within Pf1N1B4_3514 at 3920.842 kb on - strand, within Pf1N1B4_3514 at 3920.842 kb on - strand, within Pf1N1B4_3514 at 3920.876 kb on + strand, within Pf1N1B4_3514 at 3920.877 kb on - strand, within Pf1N1B4_3514 at 3920.877 kb on - strand, within Pf1N1B4_3514 at 3920.877 kb on - strand, within Pf1N1B4_3514 at 3920.975 kb on + strand, within Pf1N1B4_3514 at 3921.011 kb on + strand, within Pf1N1B4_3514 at 3921.011 kb on + strand, within Pf1N1B4_3514 at 3921.011 kb on + strand, within Pf1N1B4_3514 at 3921.011 kb on + strand, within Pf1N1B4_3514 at 3921.012 kb on - strand, within Pf1N1B4_3514 at 3921.012 kb on - strand, within Pf1N1B4_3514 at 3921.012 kb on - strand, within Pf1N1B4_3514 at 3921.012 kb on - strand, within Pf1N1B4_3514 at 3921.012 kb on - strand, within Pf1N1B4_3514 at 3921.013 kb on + strand, within Pf1N1B4_3514 at 3921.013 kb on + strand, within Pf1N1B4_3514 at 3921.014 kb on - strand, within Pf1N1B4_3514 at 3921.014 kb on - strand, within Pf1N1B4_3514 at 3921.014 kb on - strand, within Pf1N1B4_3514 at 3921.014 kb on - strand, within Pf1N1B4_3514 at 3921.014 kb on - strand, within Pf1N1B4_3514 at 3921.014 kb on - strand, within Pf1N1B4_3514 at 3921.014 kb on - strand, within Pf1N1B4_3514 at 3921.014 kb on - strand, within Pf1N1B4_3514 at 3921.152 kb on + strand, within Pf1N1B4_3514 at 3921.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 3,920,500 - -0.4 3,920,537 - -2.4 3,920,537 - -1.1 3,920,594 - -0.8 3,920,594 - -0.8 3,920,594 - -0.5 3,920,594 - -0.8 3,920,594 - -1.8 3,920,594 - -0.4 3,920,594 - -2.1 3,920,594 - +0.1 3,920,841 + Pf1N1B4_3514 0.13 -0.1 3,920,842 - Pf1N1B4_3514 0.13 -3.1 3,920,842 - Pf1N1B4_3514 0.13 +0.5 3,920,842 - Pf1N1B4_3514 0.13 -0.3 3,920,876 + Pf1N1B4_3514 0.15 -0.1 3,920,877 - Pf1N1B4_3514 0.15 -1.6 3,920,877 - Pf1N1B4_3514 0.15 -2.0 3,920,877 - Pf1N1B4_3514 0.15 -0.3 3,920,975 + Pf1N1B4_3514 0.20 +0.4 3,921,011 + Pf1N1B4_3514 0.22 -0.5 3,921,011 + Pf1N1B4_3514 0.22 +1.6 3,921,011 + Pf1N1B4_3514 0.22 +1.9 3,921,011 + Pf1N1B4_3514 0.22 +1.4 3,921,012 - Pf1N1B4_3514 0.22 +0.6 3,921,012 - Pf1N1B4_3514 0.22 -0.5 3,921,012 - Pf1N1B4_3514 0.22 +1.1 3,921,012 - Pf1N1B4_3514 0.22 -2.0 3,921,012 - Pf1N1B4_3514 0.22 +0.2 3,921,013 + Pf1N1B4_3514 0.22 +0.9 3,921,013 + Pf1N1B4_3514 0.22 +1.7 3,921,014 - Pf1N1B4_3514 0.22 -0.1 3,921,014 - Pf1N1B4_3514 0.22 -0.9 3,921,014 - Pf1N1B4_3514 0.22 +0.5 3,921,014 - Pf1N1B4_3514 0.22 -1.3 3,921,014 - Pf1N1B4_3514 0.22 -0.8 3,921,014 - Pf1N1B4_3514 0.22 -0.8 3,921,014 - Pf1N1B4_3514 0.22 -1.4 3,921,014 - Pf1N1B4_3514 0.22 -1.8 3,921,152 + Pf1N1B4_3514 0.29 -0.4 3,921,153 - +2.5
Or see this region's nucleotide sequence