Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2107 and Pf1N1B4_2108 are separated by 44 nucleotides Pf1N1B4_2108 and Pf1N1B4_2109 are separated by 6 nucleotides
Pf1N1B4_2107 - Ferric siderophore transport system, periplasmic binding protein TonB, at 2,420,420 to 2,421,118
_2107
Pf1N1B4_2108 - Biopolymer transport protein ExbD/TolR, at 2,421,163 to 2,421,591
_2108
Pf1N1B4_2109 - MotA/TolQ/ExbB proton channel family protein, at 2,421,598 to 2,422,536
_2109
Position (kb)
2421
2422 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2420.188 kb on - strand at 2420.296 kb on + strand at 2420.296 kb on + strand at 2420.296 kb on + strand at 2420.296 kb on + strand at 2420.296 kb on + strand at 2420.297 kb on - strand at 2420.297 kb on - strand at 2420.348 kb on + strand at 2420.349 kb on - strand at 2420.371 kb on + strand at 2420.371 kb on + strand at 2420.371 kb on + strand at 2420.371 kb on + strand at 2420.371 kb on + strand at 2420.371 kb on + strand at 2420.371 kb on + strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.372 kb on - strand at 2420.373 kb on + strand at 2420.373 kb on + strand at 2420.373 kb on + strand at 2420.374 kb on - strand at 2420.412 kb on + strand at 2420.412 kb on + strand at 2420.412 kb on + strand at 2420.413 kb on - strand at 2420.413 kb on - strand at 2422.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 2,420,188 - +0.6 2,420,296 + +0.0 2,420,296 + -0.1 2,420,296 + +0.6 2,420,296 + +1.4 2,420,296 + +2.9 2,420,297 - -1.9 2,420,297 - +0.2 2,420,348 + -3.1 2,420,349 - -0.1 2,420,371 + -0.1 2,420,371 + +1.7 2,420,371 + +0.1 2,420,371 + -1.1 2,420,371 + +0.6 2,420,371 + -0.7 2,420,371 + +0.9 2,420,372 - -2.1 2,420,372 - +0.4 2,420,372 - -0.3 2,420,372 - -2.5 2,420,372 - -0.1 2,420,372 - -0.1 2,420,372 - -2.0 2,420,372 - +0.9 2,420,372 - +0.1 2,420,372 - -0.1 2,420,372 - +0.3 2,420,372 - -2.7 2,420,372 - -0.3 2,420,372 - +1.7 2,420,372 - +0.9 2,420,373 + +0.2 2,420,373 + +0.5 2,420,373 + +0.7 2,420,374 - -1.0 2,420,412 + -1.1 2,420,412 + +1.4 2,420,412 + -1.1 2,420,413 - +0.6 2,420,413 - +2.1 2,422,566 - -1.4
Or see this region's nucleotide sequence