Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2108

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2107 and Pf1N1B4_2108 are separated by 44 nucleotidesPf1N1B4_2108 and Pf1N1B4_2109 are separated by 6 nucleotides Pf1N1B4_2107 - Ferric siderophore transport system, periplasmic binding protein TonB, at 2,420,420 to 2,421,118 _2107 Pf1N1B4_2108 - Biopolymer transport protein ExbD/TolR, at 2,421,163 to 2,421,591 _2108 Pf1N1B4_2109 - MotA/TolQ/ExbB proton channel family protein, at 2,421,598 to 2,422,536 _2109 Position (kb) 2421 2422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2420.188 kb on - strandat 2420.296 kb on + strandat 2420.296 kb on + strandat 2420.296 kb on + strandat 2420.296 kb on + strandat 2420.296 kb on + strandat 2420.297 kb on - strandat 2420.297 kb on - strandat 2420.348 kb on + strandat 2420.349 kb on - strandat 2420.371 kb on + strandat 2420.371 kb on + strandat 2420.371 kb on + strandat 2420.371 kb on + strandat 2420.371 kb on + strandat 2420.371 kb on + strandat 2420.371 kb on + strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.372 kb on - strandat 2420.373 kb on + strandat 2420.373 kb on + strandat 2420.373 kb on + strandat 2420.374 kb on - strandat 2420.412 kb on + strandat 2420.412 kb on + strandat 2420.412 kb on + strandat 2420.413 kb on - strandat 2420.413 kb on - strandat 2422.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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2,420,188 - +0.6
2,420,296 + +0.0
2,420,296 + -0.1
2,420,296 + +0.6
2,420,296 + +1.4
2,420,296 + +2.9
2,420,297 - -1.9
2,420,297 - +0.2
2,420,348 + -3.1
2,420,349 - -0.1
2,420,371 + -0.1
2,420,371 + +1.7
2,420,371 + +0.1
2,420,371 + -1.1
2,420,371 + +0.6
2,420,371 + -0.7
2,420,371 + +0.9
2,420,372 - -2.1
2,420,372 - +0.4
2,420,372 - -0.3
2,420,372 - -2.5
2,420,372 - -0.1
2,420,372 - -0.1
2,420,372 - -2.0
2,420,372 - +0.9
2,420,372 - +0.1
2,420,372 - -0.1
2,420,372 - +0.3
2,420,372 - -2.7
2,420,372 - -0.3
2,420,372 - +1.7
2,420,372 - +0.9
2,420,373 + +0.2
2,420,373 + +0.5
2,420,373 + +0.7
2,420,374 - -1.0
2,420,412 + -1.1
2,420,412 + +1.4
2,420,412 + -1.1
2,420,413 - +0.6
2,420,413 - +2.1
2,422,566 - -1.4

Or see this region's nucleotide sequence