Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1444

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1442 and Pf1N1B4_1443 are separated by 87 nucleotidesPf1N1B4_1443 and Pf1N1B4_1444 overlap by 10 nucleotidesPf1N1B4_1444 and Pf1N1B4_1445 are separated by 228 nucleotidesPf1N1B4_1445 and Pf1N1B4_1446 overlap by 32 nucleotides Pf1N1B4_1442 - 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17), at 1,654,182 to 1,655,021 _1442 Pf1N1B4_1443 - FIG074102: hypothetical protein, at 1,655,109 to 1,655,561 _1443 Pf1N1B4_1444 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 1,655,552 to 1,656,169 _1444 Pf1N1B4_1445 - lipoprotein, putative, at 1,656,398 to 1,657,144 _1445 Pf1N1B4_1446 - Predicted hydroxymethylpyrimidine transporter CytX, at 1,657,113 to 1,658,366 _1446 Position (kb) 1655 1656 1657Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1655.030 kb on + strandat 1655.030 kb on + strandat 1655.031 kb on - strandat 1655.031 kb on - strandat 1655.043 kb on + strandat 1655.043 kb on + strandat 1655.044 kb on - strandat 1655.044 kb on - strandat 1655.044 kb on - strandat 1655.097 kb on + strandat 1655.097 kb on + strandat 1655.097 kb on + strandat 1655.097 kb on + strandat 1655.098 kb on - strandat 1655.098 kb on - strandat 1655.098 kb on - strandat 1655.125 kb on + strandat 1655.125 kb on + strandat 1655.125 kb on + strandat 1655.126 kb on - strandat 1655.227 kb on + strand, within Pf1N1B4_1443at 1655.227 kb on + strand, within Pf1N1B4_1443at 1655.227 kb on + strand, within Pf1N1B4_1443at 1655.227 kb on + strand, within Pf1N1B4_1443at 1655.227 kb on + strand, within Pf1N1B4_1443at 1655.227 kb on + strand, within Pf1N1B4_1443at 1655.227 kb on + strand, within Pf1N1B4_1443at 1655.227 kb on + strand, within Pf1N1B4_1443at 1655.227 kb on + strand, within Pf1N1B4_1443at 1655.228 kb on - strand, within Pf1N1B4_1443at 1655.228 kb on - strand, within Pf1N1B4_1443at 1655.290 kb on + strand, within Pf1N1B4_1443at 1655.291 kb on - strand, within Pf1N1B4_1443at 1655.365 kb on + strand, within Pf1N1B4_1443at 1655.365 kb on + strand, within Pf1N1B4_1443at 1655.365 kb on + strand, within Pf1N1B4_1443at 1655.489 kb on - strand, within Pf1N1B4_1443at 1655.489 kb on - strand, within Pf1N1B4_1443at 1655.553 kb on + strandat 1655.629 kb on + strand, within Pf1N1B4_1444at 1655.629 kb on + strand, within Pf1N1B4_1444at 1655.629 kb on + strand, within Pf1N1B4_1444at 1655.630 kb on - strand, within Pf1N1B4_1444at 1655.630 kb on - strand, within Pf1N1B4_1444at 1655.630 kb on - strand, within Pf1N1B4_1444at 1655.630 kb on - strand, within Pf1N1B4_1444at 1655.630 kb on - strand, within Pf1N1B4_1444at 1655.687 kb on - strand, within Pf1N1B4_1444at 1655.687 kb on - strand, within Pf1N1B4_1444at 1655.751 kb on + strand, within Pf1N1B4_1444at 1655.752 kb on - strand, within Pf1N1B4_1444at 1655.752 kb on - strandat 1655.752 kb on - strand, within Pf1N1B4_1444at 1655.794 kb on - strand, within Pf1N1B4_1444at 1655.822 kb on + strand, within Pf1N1B4_1444at 1655.871 kb on - strand, within Pf1N1B4_1444at 1655.988 kb on + strand, within Pf1N1B4_1444at 1656.096 kb on + strand, within Pf1N1B4_1444at 1656.096 kb on + strand, within Pf1N1B4_1444at 1656.096 kb on + strand, within Pf1N1B4_1444at 1656.096 kb on + strand, within Pf1N1B4_1444at 1656.097 kb on - strand, within Pf1N1B4_1444at 1656.097 kb on - strand, within Pf1N1B4_1444at 1656.097 kb on - strand, within Pf1N1B4_1444at 1656.108 kb on + strandat 1656.108 kb on + strandat 1656.215 kb on - strandat 1656.313 kb on + strandat 1656.313 kb on + strandat 1656.313 kb on + strandat 1656.313 kb on + strandat 1656.313 kb on + strandat 1656.313 kb on + strandat 1656.313 kb on + strandat 1656.314 kb on - strandat 1656.314 kb on - strandat 1656.317 kb on + strandat 1656.317 kb on + strandat 1656.318 kb on - strandat 1656.318 kb on - strandat 1656.318 kb on - strandat 1656.318 kb on - strandat 1656.318 kb on - strandat 1656.322 kb on + strandat 1656.322 kb on + strandat 1656.322 kb on + strandat 1656.387 kb on - strandat 1656.477 kb on - strand, within Pf1N1B4_1445at 1656.477 kb on - strand, within Pf1N1B4_1445at 1656.496 kb on + strand, within Pf1N1B4_1445at 1656.496 kb on + strand, within Pf1N1B4_1445at 1656.654 kb on + strand, within Pf1N1B4_1445at 1656.654 kb on + strand, within Pf1N1B4_1445at 1656.655 kb on - strand, within Pf1N1B4_1445at 1656.655 kb on - strand, within Pf1N1B4_1445at 1656.655 kb on - strand, within Pf1N1B4_1445at 1656.655 kb on - strandat 1656.719 kb on + strand, within Pf1N1B4_1445at 1656.719 kb on + strand, within Pf1N1B4_1445at 1656.719 kb on + strand, within Pf1N1B4_1445at 1656.719 kb on + strand, within Pf1N1B4_1445at 1656.720 kb on - strand, within Pf1N1B4_1445at 1656.720 kb on - strand, within Pf1N1B4_1445at 1656.720 kb on - strand, within Pf1N1B4_1445at 1656.720 kb on - strand, within Pf1N1B4_1445at 1656.735 kb on + strand, within Pf1N1B4_1445at 1656.735 kb on + strand, within Pf1N1B4_1445at 1656.735 kb on + strand, within Pf1N1B4_1445at 1656.736 kb on - strand, within Pf1N1B4_1445at 1656.736 kb on - strand, within Pf1N1B4_1445at 1656.736 kb on - strand, within Pf1N1B4_1445at 1656.736 kb on - strand, within Pf1N1B4_1445at 1656.736 kb on - strand, within Pf1N1B4_1445at 1656.779 kb on + strand, within Pf1N1B4_1445at 1656.780 kb on - strand, within Pf1N1B4_1445at 1656.780 kb on - strand, within Pf1N1B4_1445at 1656.780 kb on - strand, within Pf1N1B4_1445at 1656.780 kb on - strand, within Pf1N1B4_1445at 1656.830 kb on + strandat 1656.830 kb on + strand, within Pf1N1B4_1445at 1656.830 kb on + strand, within Pf1N1B4_1445at 1656.830 kb on + strand, within Pf1N1B4_1445at 1656.830 kb on + strand, within Pf1N1B4_1445at 1656.830 kb on + strand, within Pf1N1B4_1445at 1656.830 kb on + strand, within Pf1N1B4_1445at 1656.830 kb on + strand, within Pf1N1B4_1445at 1656.831 kb on - strand, within Pf1N1B4_1445at 1656.831 kb on - strand, within Pf1N1B4_1445at 1656.831 kb on - strand, within Pf1N1B4_1445at 1656.831 kb on - strand, within Pf1N1B4_1445at 1656.831 kb on - strand, within Pf1N1B4_1445at 1656.831 kb on - strand, within Pf1N1B4_1445at 1656.831 kb on - strand, within Pf1N1B4_1445at 1656.847 kb on + strandat 1656.847 kb on + strand, within Pf1N1B4_1445at 1656.847 kb on + strand, within Pf1N1B4_1445at 1656.848 kb on - strand, within Pf1N1B4_1445at 1656.848 kb on - strand, within Pf1N1B4_1445at 1656.848 kb on - strand, within Pf1N1B4_1445at 1656.848 kb on - strand, within Pf1N1B4_1445at 1656.848 kb on - strandat 1656.848 kb on - strand, within Pf1N1B4_1445at 1657.014 kb on - strand, within Pf1N1B4_1445at 1657.034 kb on + strand, within Pf1N1B4_1445at 1657.034 kb on + strand, within Pf1N1B4_1445at 1657.035 kb on - strand, within Pf1N1B4_1445at 1657.035 kb on - strand, within Pf1N1B4_1445at 1657.035 kb on - strandat 1657.139 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,655,030 + +1.6
1,655,030 + -0.0
1,655,031 - +1.4
1,655,031 - -0.0
1,655,043 + -2.4
1,655,043 + -0.3
1,655,044 - +1.0
1,655,044 - -1.6
1,655,044 - +0.2
1,655,097 + -0.5
1,655,097 + -3.0
1,655,097 + +1.0
1,655,097 + +0.9
1,655,098 - -1.2
1,655,098 - +0.6
1,655,098 - -1.5
1,655,125 + -0.4
1,655,125 + -0.6
1,655,125 + -2.1
1,655,126 - -0.0
1,655,227 + Pf1N1B4_1443 0.26 -1.0
1,655,227 + Pf1N1B4_1443 0.26 +0.6
1,655,227 + Pf1N1B4_1443 0.26 +0.3
1,655,227 + Pf1N1B4_1443 0.26 +0.6
1,655,227 + Pf1N1B4_1443 0.26 -2.4
1,655,227 + Pf1N1B4_1443 0.26 -0.4
1,655,227 + Pf1N1B4_1443 0.26 -2.0
1,655,227 + Pf1N1B4_1443 0.26 -1.2
1,655,227 + Pf1N1B4_1443 0.26 -0.0
1,655,228 - Pf1N1B4_1443 0.26 -3.0
1,655,228 - Pf1N1B4_1443 0.26 +0.2
1,655,290 + Pf1N1B4_1443 0.40 +1.6
1,655,291 - Pf1N1B4_1443 0.40 -1.0
1,655,365 + Pf1N1B4_1443 0.57 +1.2
1,655,365 + Pf1N1B4_1443 0.57 -2.0
1,655,365 + Pf1N1B4_1443 0.57 +1.7
1,655,489 - Pf1N1B4_1443 0.84 +0.2
1,655,489 - Pf1N1B4_1443 0.84 +1.0
1,655,553 + +0.5
1,655,629 + Pf1N1B4_1444 0.12 -1.0
1,655,629 + Pf1N1B4_1444 0.12 -1.3
1,655,629 + Pf1N1B4_1444 0.12 -2.4
1,655,630 - Pf1N1B4_1444 0.13 -3.4
1,655,630 - Pf1N1B4_1444 0.13 -2.6
1,655,630 - Pf1N1B4_1444 0.13 +3.0
1,655,630 - Pf1N1B4_1444 0.13 -1.0
1,655,630 - Pf1N1B4_1444 0.13 -0.4
1,655,687 - Pf1N1B4_1444 0.22 +1.6
1,655,687 - Pf1N1B4_1444 0.22 -1.6
1,655,751 + Pf1N1B4_1444 0.32 -2.0
1,655,752 - Pf1N1B4_1444 0.32 +1.6
1,655,752 - -0.0
1,655,752 - Pf1N1B4_1444 0.32 -0.0
1,655,794 - Pf1N1B4_1444 0.39 +0.6
1,655,822 + Pf1N1B4_1444 0.44 +1.3
1,655,871 - Pf1N1B4_1444 0.52 -1.0
1,655,988 + Pf1N1B4_1444 0.71 -1.0
1,656,096 + Pf1N1B4_1444 0.88 -0.0
1,656,096 + Pf1N1B4_1444 0.88 -0.0
1,656,096 + Pf1N1B4_1444 0.88 -2.0
1,656,096 + Pf1N1B4_1444 0.88 -1.6
1,656,097 - Pf1N1B4_1444 0.88 -2.0
1,656,097 - Pf1N1B4_1444 0.88 -2.4
1,656,097 - Pf1N1B4_1444 0.88 +0.8
1,656,108 + -0.2
1,656,108 + -0.6
1,656,215 - -0.0
1,656,313 + -1.4
1,656,313 + +1.2
1,656,313 + +0.2
1,656,313 + -0.4
1,656,313 + +0.6
1,656,313 + -0.0
1,656,313 + -1.0
1,656,314 - -2.4
1,656,314 - +0.4
1,656,317 + -0.3
1,656,317 + -2.0
1,656,318 - -2.6
1,656,318 - +0.4
1,656,318 - -2.0
1,656,318 - -0.6
1,656,318 - -0.4
1,656,322 + -1.5
1,656,322 + -0.0
1,656,322 + +2.8
1,656,387 - -0.6
1,656,477 - Pf1N1B4_1445 0.11 -1.6
1,656,477 - Pf1N1B4_1445 0.11 -0.0
1,656,496 + Pf1N1B4_1445 0.13 -2.2
1,656,496 + Pf1N1B4_1445 0.13 -2.6
1,656,654 + Pf1N1B4_1445 0.34 -2.4
1,656,654 + Pf1N1B4_1445 0.34 -2.4
1,656,655 - Pf1N1B4_1445 0.34 -0.0
1,656,655 - Pf1N1B4_1445 0.34 +0.6
1,656,655 - Pf1N1B4_1445 0.34 -2.8
1,656,655 - +2.3
1,656,719 + Pf1N1B4_1445 0.43 -1.3
1,656,719 + Pf1N1B4_1445 0.43 -1.0
1,656,719 + Pf1N1B4_1445 0.43 -1.6
1,656,719 + Pf1N1B4_1445 0.43 -1.0
1,656,720 - Pf1N1B4_1445 0.43 -2.8
1,656,720 - Pf1N1B4_1445 0.43 -1.3
1,656,720 - Pf1N1B4_1445 0.43 -1.0
1,656,720 - Pf1N1B4_1445 0.43 -1.2
1,656,735 + Pf1N1B4_1445 0.45 -0.0
1,656,735 + Pf1N1B4_1445 0.45 -1.0
1,656,735 + Pf1N1B4_1445 0.45 -1.6
1,656,736 - Pf1N1B4_1445 0.45 -2.4
1,656,736 - Pf1N1B4_1445 0.45 +1.6
1,656,736 - Pf1N1B4_1445 0.45 -1.3
1,656,736 - Pf1N1B4_1445 0.45 -1.0
1,656,736 - Pf1N1B4_1445 0.45 -2.4
1,656,779 + Pf1N1B4_1445 0.51 -2.0
1,656,780 - Pf1N1B4_1445 0.51 -0.0
1,656,780 - Pf1N1B4_1445 0.51 -2.0
1,656,780 - Pf1N1B4_1445 0.51 -3.4
1,656,780 - Pf1N1B4_1445 0.51 -0.4
1,656,830 + -0.0
1,656,830 + Pf1N1B4_1445 0.58 -2.4
1,656,830 + Pf1N1B4_1445 0.58 -1.7
1,656,830 + Pf1N1B4_1445 0.58 -2.6
1,656,830 + Pf1N1B4_1445 0.58 -2.4
1,656,830 + Pf1N1B4_1445 0.58 -0.4
1,656,830 + Pf1N1B4_1445 0.58 +2.3
1,656,830 + Pf1N1B4_1445 0.58 -0.6
1,656,831 - Pf1N1B4_1445 0.58 -1.6
1,656,831 - Pf1N1B4_1445 0.58 +0.2
1,656,831 - Pf1N1B4_1445 0.58 -1.0
1,656,831 - Pf1N1B4_1445 0.58 -0.8
1,656,831 - Pf1N1B4_1445 0.58 -1.0
1,656,831 - Pf1N1B4_1445 0.58 -0.8
1,656,831 - Pf1N1B4_1445 0.58 -0.7
1,656,847 + -1.0
1,656,847 + Pf1N1B4_1445 0.60 -2.6
1,656,847 + Pf1N1B4_1445 0.60 +0.2
1,656,848 - Pf1N1B4_1445 0.60 -1.6
1,656,848 - Pf1N1B4_1445 0.60 -2.6
1,656,848 - Pf1N1B4_1445 0.60 +0.4
1,656,848 - Pf1N1B4_1445 0.60 +0.6
1,656,848 - -2.4
1,656,848 - Pf1N1B4_1445 0.60 -1.0
1,657,014 - Pf1N1B4_1445 0.82 +1.0
1,657,034 + Pf1N1B4_1445 0.85 -3.5
1,657,034 + Pf1N1B4_1445 0.85 -2.0
1,657,035 - Pf1N1B4_1445 0.85 -0.0
1,657,035 - Pf1N1B4_1445 0.85 -2.1
1,657,035 - -1.0
1,657,139 - +0.3

Or see this region's nucleotide sequence