Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1164 and Pf1N1B4_1165 are separated by 78 nucleotides Pf1N1B4_1165 and Pf1N1B4_1166 are separated by 16 nucleotides Pf1N1B4_1166 and Pf1N1B4_1167 are separated by 8 nucleotides
Pf1N1B4_1164 - Triosephosphate isomerase (EC 5.3.1.1), at 1,312,843 to 1,313,586
_1164
Pf1N1B4_1165 - Phosphoglucosamine mutase (EC 5.4.2.10), at 1,313,665 to 1,315,002
_1165
Pf1N1B4_1166 - Dihydropteroate synthase (EC 2.5.1.15), at 1,315,019 to 1,315,870
_1166
Pf1N1B4_1167 - Cell division protein FtsH (EC 3.4.24.-), at 1,315,879 to 1,317,789
_1167
Position (kb)
1313
1314
1315
1316 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1313.297 kb on - strand, within Pf1N1B4_1164 at 1313.604 kb on - strand at 1313.604 kb on - strand at 1313.684 kb on - strand at 1313.684 kb on - strand at 1315.003 kb on - strand at 1315.003 kb on - strand at 1315.003 kb on - strand at 1315.003 kb on - strand at 1315.003 kb on - strand at 1315.003 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.007 kb on - strand at 1315.021 kb on - strand at 1315.881 kb on - strand at 1315.881 kb on - strand at 1315.881 kb on - strand at 1315.883 kb on - strand at 1315.883 kb on - strand at 1315.883 kb on - strand at 1315.883 kb on - strand at 1315.883 kb on - strand at 1315.883 kb on - strand at 1315.883 kb on - strand at 1315.953 kb on + strand at 1315.953 kb on + strand at 1315.953 kb on + strand at 1315.954 kb on - strand at 1315.954 kb on - strand at 1315.954 kb on - strand at 1315.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,313,297 - Pf1N1B4_1164 0.61 -0.7 1,313,604 - -2.5 1,313,604 - -0.8 1,313,684 - +0.9 1,313,684 - -0.4 1,315,003 - -1.1 1,315,003 - +0.7 1,315,003 - -0.3 1,315,003 - -2.4 1,315,003 - -3.1 1,315,003 - -2.4 1,315,007 - -3.5 1,315,007 - -1.1 1,315,007 - -2.1 1,315,007 - -2.1 1,315,007 - -1.1 1,315,007 - -2.1 1,315,007 - -2.1 1,315,007 - -1.7 1,315,007 - -2.4 1,315,007 - -2.4 1,315,007 - -1.1 1,315,007 - -2.4 1,315,021 - +1.2 1,315,881 - +0.1 1,315,881 - +0.4 1,315,881 - -0.5 1,315,883 - -2.0 1,315,883 - -0.1 1,315,883 - -0.3 1,315,883 - -0.1 1,315,883 - +0.5 1,315,883 - +0.9 1,315,883 - -0.1 1,315,953 + -1.1 1,315,953 + -1.4 1,315,953 + -1.1 1,315,954 - -0.2 1,315,954 - -1.3 1,315,954 - +0.9 1,315,954 - -0.1
Or see this region's nucleotide sequence