Experiment: Formate deepwell acetate FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02240 and MMP_RS02245 are separated by 30 nucleotides MMP_RS02245 and MMP_RS02250 are separated by 132 nucleotides MMP_RS02250 and MMP_RS02255 are separated by 126 nucleotides MMP_RS02255 and MMP_RS02260 are separated by 406 nucleotides
MMP_RS02240: MMP_RS02240 - methanogenesis marker 7 protein, at 423,270 to 424,184
_RS02240
MMP_RS02245: MMP_RS02245 - hypothetical protein, at 424,215 to 424,667
_RS02245
MMP_RS02250: MMP_RS02250 - FRG domain-containing protein, at 424,800 to 426,188
_RS02250
MMP_RS02255: MMP_RS02255 - hypothetical protein, at 426,315 to 426,530
_RS02255
MMP_RS02260: MMP_RS02260 - lactate utilization protein, at 426,937 to 427,578
_RS02260
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 423.885 kb on + strand, within MMP_RS02240 at 423.959 kb on + strand, within MMP_RS02240 at 423.959 kb on + strand, within MMP_RS02240 at 424.077 kb on - strand, within MMP_RS02240 at 424.098 kb on - strand at 424.099 kb on + strand at 424.104 kb on + strand at 424.183 kb on + strand at 424.426 kb on - strand, within MMP_RS02245 at 424.427 kb on + strand, within MMP_RS02245 at 424.435 kb on + strand, within MMP_RS02245 at 424.511 kb on - strand, within MMP_RS02245 at 424.517 kb on + strand, within MMP_RS02245 at 424.657 kb on - strand at 424.657 kb on - strand at 424.657 kb on - strand at 424.659 kb on - strand at 424.744 kb on - strand at 424.745 kb on + strand at 425.010 kb on + strand, within MMP_RS02250 at 425.092 kb on - strand, within MMP_RS02250 at 425.128 kb on - strand, within MMP_RS02250 at 425.145 kb on + strand, within MMP_RS02250 at 425.165 kb on - strand, within MMP_RS02250 at 425.166 kb on + strand, within MMP_RS02250 at 425.204 kb on - strand, within MMP_RS02250 at 425.204 kb on - strand, within MMP_RS02250 at 425.209 kb on + strand, within MMP_RS02250 at 425.262 kb on + strand, within MMP_RS02250 at 425.264 kb on + strand, within MMP_RS02250 at 425.266 kb on - strand, within MMP_RS02250 at 425.266 kb on - strand, within MMP_RS02250 at 425.267 kb on + strand, within MMP_RS02250 at 425.279 kb on + strand, within MMP_RS02250 at 425.279 kb on + strand, within MMP_RS02250 at 425.283 kb on + strand, within MMP_RS02250 at 425.372 kb on + strand, within MMP_RS02250 at 425.401 kb on + strand, within MMP_RS02250 at 425.472 kb on + strand, within MMP_RS02250 at 425.477 kb on + strand, within MMP_RS02250 at 425.481 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.525 kb on - strand, within MMP_RS02250 at 425.530 kb on - strand, within MMP_RS02250 at 425.530 kb on - strand, within MMP_RS02250 at 425.556 kb on + strand, within MMP_RS02250 at 425.779 kb on - strand, within MMP_RS02250 at 425.780 kb on + strand, within MMP_RS02250 at 425.780 kb on + strand, within MMP_RS02250 at 425.841 kb on + strand, within MMP_RS02250 at 425.868 kb on - strand, within MMP_RS02250 at 425.904 kb on + strand, within MMP_RS02250 at 426.002 kb on - strand, within MMP_RS02250 at 426.008 kb on - strand, within MMP_RS02250 at 426.026 kb on - strand, within MMP_RS02250 at 426.026 kb on - strand, within MMP_RS02250 at 426.027 kb on + strand, within MMP_RS02250 at 426.027 kb on + strand, within MMP_RS02250 at 426.062 kb on - strand at 426.063 kb on + strand at 426.186 kb on - strand at 426.221 kb on + strand at 426.385 kb on - strand, within MMP_RS02255 at 426.402 kb on + strand, within MMP_RS02255 at 426.402 kb on + strand, within MMP_RS02255 at 426.456 kb on - strand, within MMP_RS02255 at 426.461 kb on - strand, within MMP_RS02255 at 426.486 kb on + strand, within MMP_RS02255 at 426.506 kb on - strand, within MMP_RS02255 at 426.506 kb on - strand, within MMP_RS02255 at 426.567 kb on - strand at 426.568 kb on + strand at 426.571 kb on - strand at 426.578 kb on + strand at 426.609 kb on + strand at 426.613 kb on - strand at 426.654 kb on + strand at 426.672 kb on + strand at 426.688 kb on - strand at 426.733 kb on + strand at 426.780 kb on - strand at 426.842 kb on - strand at 426.868 kb on - strand at 426.869 kb on + strand at 426.874 kb on - strand at 426.874 kb on - strand at 426.874 kb on - strand at 426.875 kb on + strand at 426.875 kb on + strand at 426.883 kb on - strand at 426.884 kb on + strand at 427.051 kb on - strand, within MMP_RS02260 at 427.051 kb on - strand, within MMP_RS02260 at 427.052 kb on + strand, within MMP_RS02260 at 427.053 kb on - strand, within MMP_RS02260 at 427.063 kb on - strand, within MMP_RS02260 at 427.064 kb on + strand, within MMP_RS02260 at 427.123 kb on + strand, within MMP_RS02260
Per-strain Table
Position Strand Gene LocusTag Fraction Formate deepwell acetate FREE remove 423,885 + MMP_RS02240 0.67 -1.9 423,959 + MMP_RS02240 0.75 -1.8 423,959 + MMP_RS02240 0.75 -1.9 424,077 - MMP_RS02240 0.88 -1.0 424,098 - -1.7 424,099 + -0.9 424,104 + -0.9 424,183 + -0.4 424,426 - MMP_RS02245 0.47 -1.8 424,427 + MMP_RS02245 0.47 +0.5 424,435 + MMP_RS02245 0.49 -1.1 424,511 - MMP_RS02245 0.65 -1.1 424,517 + MMP_RS02245 0.67 +0.5 424,657 - -0.4 424,657 - +1.6 424,657 - +0.8 424,659 - -1.8 424,744 - -0.6 424,745 + +0.5 425,010 + MMP_RS02250 0.15 -4.3 425,092 - MMP_RS02250 0.21 +0.5 425,128 - MMP_RS02250 0.24 +0.9 425,145 + MMP_RS02250 0.25 -3.1 425,165 - MMP_RS02250 0.26 +0.2 425,166 + MMP_RS02250 0.26 +0.5 425,204 - MMP_RS02250 0.29 -1.0 425,204 - MMP_RS02250 0.29 +1.4 425,209 + MMP_RS02250 0.29 -3.2 425,262 + MMP_RS02250 0.33 +0.3 425,264 + MMP_RS02250 0.33 -2.6 425,266 - MMP_RS02250 0.34 -1.5 425,266 - MMP_RS02250 0.34 -1.0 425,267 + MMP_RS02250 0.34 -0.2 425,279 + MMP_RS02250 0.34 -0.8 425,279 + MMP_RS02250 0.34 -1.8 425,283 + MMP_RS02250 0.35 +1.8 425,372 + MMP_RS02250 0.41 +0.0 425,401 + MMP_RS02250 0.43 -2.1 425,472 + MMP_RS02250 0.48 +0.2 425,477 + MMP_RS02250 0.49 -0.1 425,481 - MMP_RS02250 0.49 -1.5 425,525 - MMP_RS02250 0.52 -0.5 425,525 - MMP_RS02250 0.52 -0.4 425,525 - MMP_RS02250 0.52 +0.9 425,530 - MMP_RS02250 0.53 +0.4 425,530 - MMP_RS02250 0.53 +0.5 425,556 + MMP_RS02250 0.54 -1.5 425,779 - MMP_RS02250 0.70 -2.3 425,780 + MMP_RS02250 0.71 -0.7 425,780 + MMP_RS02250 0.71 +0.2 425,841 + MMP_RS02250 0.75 +0.5 425,868 - MMP_RS02250 0.77 -0.1 425,904 + MMP_RS02250 0.79 -0.2 426,002 - MMP_RS02250 0.87 +0.8 426,008 - MMP_RS02250 0.87 +0.2 426,026 - MMP_RS02250 0.88 +1.3 426,026 - MMP_RS02250 0.88 -0.3 426,027 + MMP_RS02250 0.88 +0.8 426,027 + MMP_RS02250 0.88 -1.5 426,062 - -0.9 426,063 + -0.3 426,186 - +0.6 426,221 + +0.1 426,385 - MMP_RS02255 0.32 +1.1 426,402 + MMP_RS02255 0.40 +1.0 426,402 + MMP_RS02255 0.40 +0.8 426,456 - MMP_RS02255 0.65 -1.7 426,461 - MMP_RS02255 0.68 -0.1 426,486 + MMP_RS02255 0.79 -1.0 426,506 - MMP_RS02255 0.88 -0.3 426,506 - MMP_RS02255 0.88 -2.8 426,567 - +0.7 426,568 + +1.2 426,571 - +0.7 426,578 + -1.4 426,609 + +0.8 426,613 - +0.3 426,654 + -0.1 426,672 + -1.5 426,688 - -1.2 426,733 + -0.7 426,780 - +1.0 426,842 - -0.9 426,868 - +0.4 426,869 + -0.2 426,874 - -1.2 426,874 - -1.4 426,874 - -2.6 426,875 + +0.5 426,875 + +0.7 426,883 - -3.8 426,884 + -0.2 427,051 - MMP_RS02260 0.18 -1.8 427,051 - MMP_RS02260 0.18 +0.5 427,052 + MMP_RS02260 0.18 -3.5 427,053 - MMP_RS02260 0.18 +0.8 427,063 - MMP_RS02260 0.20 -0.2 427,064 + MMP_RS02260 0.20 -2.6 427,123 + MMP_RS02260 0.29 -0.7
Or see this region's nucleotide sequence