Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06556 and H281DRAFT_06557 are separated by 147 nucleotides H281DRAFT_06557 and H281DRAFT_06558 are separated by 78 nucleotides H281DRAFT_06558 and H281DRAFT_06559 overlap by 18 nucleotides H281DRAFT_06559 and H281DRAFT_06560 are separated by 85 nucleotides H281DRAFT_06560 and H281DRAFT_06561 overlap by 10 nucleotides
H281DRAFT_06556: H281DRAFT_06556 - hypothetical protein, at 758 to 979
_06556
H281DRAFT_06557: H281DRAFT_06557 - hypothetical protein, at 1,127 to 1,321
_06557
H281DRAFT_06558: H281DRAFT_06558 - hypothetical protein, at 1,400 to 1,603
_06558
H281DRAFT_06559: H281DRAFT_06559 - hypothetical protein, at 1,586 to 1,891
_06559
H281DRAFT_06560: H281DRAFT_06560 - hypothetical protein, at 1,977 to 2,675
_06560
H281DRAFT_06561: H281DRAFT_06561 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 2,666 to 3,037
_06561
Position (kb)
1
2 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 0.627 kb on + strand at 0.628 kb on - strand at 0.628 kb on - strand at 0.641 kb on + strand at 0.730 kb on + strand at 0.731 kb on - strand at 0.731 kb on - strand at 0.771 kb on - strand at 0.795 kb on - strand, within H281DRAFT_06556 at 0.834 kb on + strand, within H281DRAFT_06556 at 0.952 kb on - strand, within H281DRAFT_06556 at 1.014 kb on - strand at 1.043 kb on + strand at 1.060 kb on + strand at 1.256 kb on + strand, within H281DRAFT_06557 at 1.319 kb on + strand at 1.349 kb on - strand at 1.358 kb on + strand at 1.497 kb on + strand, within H281DRAFT_06558 at 1.497 kb on + strand, within H281DRAFT_06558 at 1.498 kb on - strand, within H281DRAFT_06558 at 1.524 kb on - strand, within H281DRAFT_06558 at 1.556 kb on + strand, within H281DRAFT_06558 at 1.557 kb on - strand, within H281DRAFT_06558 at 1.575 kb on + strand, within H281DRAFT_06558 at 1.575 kb on + strand, within H281DRAFT_06558 at 1.584 kb on + strand at 1.584 kb on + strand at 1.585 kb on - strand at 1.585 kb on - strand at 1.587 kb on + strand at 1.587 kb on + strand at 1.995 kb on - strand at 2.147 kb on - strand, within H281DRAFT_06560 at 2.315 kb on - strand, within H281DRAFT_06560 at 2.376 kb on + strand, within H281DRAFT_06560 at 2.613 kb on + strand at 2.613 kb on + strand at 2.613 kb on + strand at 2.614 kb on - strand at 2.642 kb on + strand at 2.674 kb on - strand at 2.708 kb on + strand, within H281DRAFT_06561 at 2.709 kb on - strand, within H281DRAFT_06561 at 2.787 kb on + strand, within H281DRAFT_06561 at 2.788 kb on - strand, within H281DRAFT_06561 at 2.788 kb on - strand, within H281DRAFT_06561 at 2.788 kb on - strand, within H281DRAFT_06561 at 2.788 kb on - strand, within H281DRAFT_06561 at 2.891 kb on + strand, within H281DRAFT_06561 at 2.891 kb on + strand, within H281DRAFT_06561
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 627 + +1.1 628 - +0.2 628 - -0.4 641 + +1.4 730 + +0.8 731 - -0.6 731 - -0.2 771 - -0.6 795 - H281DRAFT_06556 0.17 -0.2 834 + H281DRAFT_06556 0.34 -0.4 952 - H281DRAFT_06556 0.87 -0.6 1,014 - -0.8 1,043 + +0.3 1,060 + -0.5 1,256 + H281DRAFT_06557 0.66 -0.3 1,319 + -0.5 1,349 - -0.1 1,358 + -0.2 1,497 + H281DRAFT_06558 0.48 +0.9 1,497 + H281DRAFT_06558 0.48 -0.4 1,498 - H281DRAFT_06558 0.48 -0.4 1,524 - H281DRAFT_06558 0.61 -0.5 1,556 + H281DRAFT_06558 0.76 -0.2 1,557 - H281DRAFT_06558 0.77 -0.6 1,575 + H281DRAFT_06558 0.86 -0.4 1,575 + H281DRAFT_06558 0.86 -0.4 1,584 + -0.8 1,584 + +0.4 1,585 - +0.2 1,585 - +0.1 1,587 + -0.1 1,587 + +0.2 1,995 - +0.1 2,147 - H281DRAFT_06560 0.24 -1.6 2,315 - H281DRAFT_06560 0.48 -1.1 2,376 + H281DRAFT_06560 0.57 +0.5 2,613 + -0.9 2,613 + +0.7 2,613 + +1.0 2,614 - +0.4 2,642 + +1.1 2,674 - +0.0 2,708 + H281DRAFT_06561 0.11 +0.5 2,709 - H281DRAFT_06561 0.12 +0.7 2,787 + H281DRAFT_06561 0.33 +5.3 2,788 - H281DRAFT_06561 0.33 -1.8 2,788 - H281DRAFT_06561 0.33 -0.9 2,788 - H281DRAFT_06561 0.33 -0.7 2,788 - H281DRAFT_06561 0.33 +0.4 2,891 + H281DRAFT_06561 0.60 +0.9 2,891 + H281DRAFT_06561 0.60 +0.1
Or see this region's nucleotide sequence