Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06412

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06411 and H281DRAFT_06412 are separated by 375 nucleotidesH281DRAFT_06412 and H281DRAFT_06413 overlap by 29 nucleotides H281DRAFT_06411: H281DRAFT_06411 - hypothetical protein, at 9,323 to 10,294 _06411 H281DRAFT_06412: H281DRAFT_06412 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 10,670 to 12,133 _06412 H281DRAFT_06413: H281DRAFT_06413 - adenylyl-sulfate kinase, at 12,105 to 13,370 _06413 Position (kb) 10 11 12 13Strain fitness (log2 ratio) -2 -1 0 1 2 3at 9.690 kb on + strand, within H281DRAFT_06411at 9.691 kb on - strand, within H281DRAFT_06411at 9.711 kb on - strandat 9.711 kb on - strand, within H281DRAFT_06411at 9.734 kb on - strand, within H281DRAFT_06411at 9.907 kb on + strand, within H281DRAFT_06411at 9.952 kb on + strand, within H281DRAFT_06411at 9.953 kb on - strand, within H281DRAFT_06411at 10.123 kb on - strand, within H281DRAFT_06411at 10.168 kb on + strand, within H281DRAFT_06411at 10.168 kb on + strand, within H281DRAFT_06411at 10.168 kb on + strand, within H281DRAFT_06411at 10.227 kb on + strandat 10.228 kb on - strandat 10.228 kb on - strandat 10.231 kb on + strandat 10.231 kb on + strandat 10.231 kb on + strandat 10.232 kb on - strandat 10.232 kb on - strandat 10.261 kb on - strandat 10.261 kb on - strandat 10.378 kb on + strandat 10.378 kb on + strandat 10.378 kb on + strandat 10.379 kb on - strandat 10.400 kb on + strandat 10.401 kb on - strandat 10.512 kb on + strandat 10.512 kb on + strandat 10.513 kb on - strandat 10.513 kb on - strandat 10.538 kb on + strandat 10.539 kb on - strandat 10.564 kb on + strandat 10.565 kb on - strandat 10.578 kb on + strandat 10.579 kb on - strandat 10.579 kb on - strandat 10.706 kb on - strandat 10.805 kb on + strandat 10.829 kb on - strand, within H281DRAFT_06412at 10.829 kb on - strand, within H281DRAFT_06412at 10.831 kb on + strand, within H281DRAFT_06412at 10.862 kb on + strand, within H281DRAFT_06412at 10.891 kb on - strand, within H281DRAFT_06412at 10.896 kb on + strand, within H281DRAFT_06412at 10.897 kb on - strand, within H281DRAFT_06412at 10.897 kb on - strand, within H281DRAFT_06412at 10.897 kb on - strand, within H281DRAFT_06412at 10.965 kb on + strand, within H281DRAFT_06412at 11.055 kb on - strand, within H281DRAFT_06412at 11.055 kb on - strand, within H281DRAFT_06412at 11.128 kb on - strand, within H281DRAFT_06412at 11.210 kb on + strand, within H281DRAFT_06412at 11.210 kb on + strand, within H281DRAFT_06412at 11.211 kb on - strand, within H281DRAFT_06412at 11.307 kb on + strand, within H281DRAFT_06412at 11.335 kb on - strand, within H281DRAFT_06412at 11.335 kb on - strand, within H281DRAFT_06412at 11.377 kb on + strand, within H281DRAFT_06412at 11.394 kb on - strand, within H281DRAFT_06412at 11.397 kb on + strand, within H281DRAFT_06412at 11.398 kb on - strand, within H281DRAFT_06412at 11.484 kb on - strand, within H281DRAFT_06412at 11.491 kb on + strand, within H281DRAFT_06412at 11.491 kb on + strandat 11.492 kb on - strand, within H281DRAFT_06412at 11.492 kb on - strand, within H281DRAFT_06412at 11.492 kb on - strand, within H281DRAFT_06412at 11.492 kb on - strand, within H281DRAFT_06412at 11.494 kb on - strand, within H281DRAFT_06412at 11.515 kb on - strand, within H281DRAFT_06412at 11.537 kb on - strand, within H281DRAFT_06412at 11.742 kb on + strand, within H281DRAFT_06412at 11.742 kb on + strand, within H281DRAFT_06412at 11.742 kb on + strand, within H281DRAFT_06412at 11.742 kb on + strand, within H281DRAFT_06412at 11.809 kb on - strand, within H281DRAFT_06412at 11.809 kb on - strand, within H281DRAFT_06412at 11.922 kb on + strand, within H281DRAFT_06412at 11.938 kb on + strandat 11.938 kb on + strand, within H281DRAFT_06412at 11.938 kb on + strand, within H281DRAFT_06412at 11.939 kb on - strand, within H281DRAFT_06412at 11.939 kb on - strand, within H281DRAFT_06412at 12.097 kb on + strandat 12.098 kb on - strandat 12.149 kb on - strandat 12.152 kb on - strandat 12.152 kb on - strandat 12.152 kb on - strandat 12.152 kb on - strandat 12.152 kb on - strandat 12.248 kb on - strand, within H281DRAFT_06413at 12.375 kb on - strand, within H281DRAFT_06413at 12.467 kb on - strand, within H281DRAFT_06413at 12.605 kb on - strand, within H281DRAFT_06413at 12.605 kb on - strand, within H281DRAFT_06413at 12.738 kb on - strand, within H281DRAFT_06413at 12.812 kb on - strand, within H281DRAFT_06413at 12.887 kb on + strand, within H281DRAFT_06413at 12.913 kb on - strand, within H281DRAFT_06413at 13.011 kb on - strand, within H281DRAFT_06413at 13.025 kb on + strand, within H281DRAFT_06413at 13.069 kb on + strand, within H281DRAFT_06413at 13.070 kb on - strand, within H281DRAFT_06413at 13.071 kb on + strand, within H281DRAFT_06413at 13.071 kb on + strand, within H281DRAFT_06413at 13.071 kb on + strand, within H281DRAFT_06413at 13.071 kb on + strand, within H281DRAFT_06413at 13.072 kb on - strand, within H281DRAFT_06413at 13.072 kb on - strand, within H281DRAFT_06413at 13.072 kb on - strand, within H281DRAFT_06413at 13.072 kb on - strand, within H281DRAFT_06413at 13.122 kb on + strand, within H281DRAFT_06413at 13.130 kb on - strand, within H281DRAFT_06413at 13.133 kb on + strand, within H281DRAFT_06413at 13.133 kb on + strand, within H281DRAFT_06413

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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9,690 + H281DRAFT_06411 0.38 -1.9
9,691 - H281DRAFT_06411 0.38 +0.8
9,711 - -0.9
9,711 - H281DRAFT_06411 0.40 +0.4
9,734 - H281DRAFT_06411 0.42 -0.7
9,907 + H281DRAFT_06411 0.60 +2.1
9,952 + H281DRAFT_06411 0.65 +0.5
9,953 - H281DRAFT_06411 0.65 +1.1
10,123 - H281DRAFT_06411 0.82 +1.4
10,168 + H281DRAFT_06411 0.87 +0.9
10,168 + H281DRAFT_06411 0.87 +0.9
10,168 + H281DRAFT_06411 0.87 +1.8
10,227 + +0.7
10,228 - +1.6
10,228 - +1.7
10,231 + +2.7
10,231 + +0.7
10,231 + +0.1
10,232 - +0.8
10,232 - +0.9
10,261 - +1.8
10,261 - +1.1
10,378 + +1.5
10,378 + +0.7
10,378 + +2.0
10,379 - +0.2
10,400 + -1.4
10,401 - -0.6
10,512 + +0.4
10,512 + +0.4
10,513 - +0.8
10,513 - +0.9
10,538 + +0.0
10,539 - +0.6
10,564 + +0.5
10,565 - -1.1
10,578 + -1.2
10,579 - +1.4
10,579 - +1.2
10,706 - -0.3
10,805 + +1.6
10,829 - H281DRAFT_06412 0.11 +0.3
10,829 - H281DRAFT_06412 0.11 +1.3
10,831 + H281DRAFT_06412 0.11 +0.8
10,862 + H281DRAFT_06412 0.13 +2.8
10,891 - H281DRAFT_06412 0.15 +0.3
10,896 + H281DRAFT_06412 0.15 -0.9
10,897 - H281DRAFT_06412 0.16 +0.4
10,897 - H281DRAFT_06412 0.16 +0.4
10,897 - H281DRAFT_06412 0.16 +0.3
10,965 + H281DRAFT_06412 0.20 +0.7
11,055 - H281DRAFT_06412 0.26 -0.1
11,055 - H281DRAFT_06412 0.26 +1.5
11,128 - H281DRAFT_06412 0.31 +0.5
11,210 + H281DRAFT_06412 0.37 +0.0
11,210 + H281DRAFT_06412 0.37 +2.0
11,211 - H281DRAFT_06412 0.37 +0.9
11,307 + H281DRAFT_06412 0.44 +0.1
11,335 - H281DRAFT_06412 0.45 +0.7
11,335 - H281DRAFT_06412 0.45 +0.3
11,377 + H281DRAFT_06412 0.48 -1.2
11,394 - H281DRAFT_06412 0.49 -0.1
11,397 + H281DRAFT_06412 0.50 +0.8
11,398 - H281DRAFT_06412 0.50 -0.6
11,484 - H281DRAFT_06412 0.56 +0.5
11,491 + H281DRAFT_06412 0.56 +0.6
11,491 + +0.7
11,492 - H281DRAFT_06412 0.56 +1.0
11,492 - H281DRAFT_06412 0.56 +0.2
11,492 - H281DRAFT_06412 0.56 -0.7
11,492 - H281DRAFT_06412 0.56 +0.2
11,494 - H281DRAFT_06412 0.56 -0.5
11,515 - H281DRAFT_06412 0.58 +0.5
11,537 - H281DRAFT_06412 0.59 +1.2
11,742 + H281DRAFT_06412 0.73 -1.0
11,742 + H281DRAFT_06412 0.73 +0.7
11,742 + H281DRAFT_06412 0.73 +0.5
11,742 + H281DRAFT_06412 0.73 +0.4
11,809 - H281DRAFT_06412 0.78 +0.6
11,809 - H281DRAFT_06412 0.78 +0.8
11,922 + H281DRAFT_06412 0.86 +0.6
11,938 + -1.2
11,938 + H281DRAFT_06412 0.87 +0.5
11,938 + H281DRAFT_06412 0.87 +0.3
11,939 - H281DRAFT_06412 0.87 +0.9
11,939 - H281DRAFT_06412 0.87 +1.2
12,097 + +0.8
12,098 - +0.4
12,149 - +0.3
12,152 - +0.5
12,152 - +1.3
12,152 - +1.0
12,152 - +0.6
12,152 - +1.0
12,248 - H281DRAFT_06413 0.11 +0.1
12,375 - H281DRAFT_06413 0.21 +1.5
12,467 - H281DRAFT_06413 0.29 +0.2
12,605 - H281DRAFT_06413 0.39 +1.6
12,605 - H281DRAFT_06413 0.39 +0.8
12,738 - H281DRAFT_06413 0.50 +1.2
12,812 - H281DRAFT_06413 0.56 +0.7
12,887 + H281DRAFT_06413 0.62 -1.7
12,913 - H281DRAFT_06413 0.64 +0.5
13,011 - H281DRAFT_06413 0.72 +0.7
13,025 + H281DRAFT_06413 0.73 +1.7
13,069 + H281DRAFT_06413 0.76 +0.5
13,070 - H281DRAFT_06413 0.76 +0.6
13,071 + H281DRAFT_06413 0.76 +0.3
13,071 + H281DRAFT_06413 0.76 +0.0
13,071 + H281DRAFT_06413 0.76 -0.4
13,071 + H281DRAFT_06413 0.76 +1.2
13,072 - H281DRAFT_06413 0.76 +0.4
13,072 - H281DRAFT_06413 0.76 +0.3
13,072 - H281DRAFT_06413 0.76 +1.8
13,072 - H281DRAFT_06413 0.76 +0.8
13,122 + H281DRAFT_06413 0.80 +0.9
13,130 - H281DRAFT_06413 0.81 +0.7
13,133 + H281DRAFT_06413 0.81 +0.4
13,133 + H281DRAFT_06413 0.81 +0.4

Or see this region's nucleotide sequence