Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06394

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06393 and H281DRAFT_06394 are separated by 32 nucleotidesH281DRAFT_06394 and H281DRAFT_06395 overlap by 4 nucleotidesH281DRAFT_06395 and H281DRAFT_06396 overlap by 4 nucleotides H281DRAFT_06393: H281DRAFT_06393 - N-carbamoyl-L-amino-acid hydrolase, at 64,284 to 65,582 _06393 H281DRAFT_06394: H281DRAFT_06394 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 65,615 to 66,316 _06394 H281DRAFT_06395: H281DRAFT_06395 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 66,313 to 67,080 _06395 H281DRAFT_06396: H281DRAFT_06396 - amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-), at 67,077 to 68,141 _06396 Position (kb) 65 66 67Strain fitness (log2 ratio) -1 0 1at 64.761 kb on + strand, within H281DRAFT_06393at 65.035 kb on + strand, within H281DRAFT_06393at 65.208 kb on - strand, within H281DRAFT_06393at 65.715 kb on + strand, within H281DRAFT_06394at 67.003 kb on + strand, within H281DRAFT_06395at 67.189 kb on + strand, within H281DRAFT_06396at 67.273 kb on + strand, within H281DRAFT_06396at 67.273 kb on + strand, within H281DRAFT_06396

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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64,761 + H281DRAFT_06393 0.37 -0.7
65,035 + H281DRAFT_06393 0.58 -0.9
65,208 - H281DRAFT_06393 0.71 -1.4
65,715 + H281DRAFT_06394 0.14 +0.2
67,003 + H281DRAFT_06395 0.90 -1.7
67,189 + H281DRAFT_06396 0.11 -0.7
67,273 + H281DRAFT_06396 0.18 +0.4
67,273 + H281DRAFT_06396 0.18 -0.6

Or see this region's nucleotide sequence