Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06026

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06024 and H281DRAFT_06025 are separated by 97 nucleotidesH281DRAFT_06025 and H281DRAFT_06026 overlap by 4 nucleotidesH281DRAFT_06026 and H281DRAFT_06027 are separated by 75 nucleotides H281DRAFT_06024: H281DRAFT_06024 - transcriptional regulator, LysR family, at 29,779 to 30,711 _06024 H281DRAFT_06025: H281DRAFT_06025 - chromate transporter, at 30,809 to 31,378 _06025 H281DRAFT_06026: H281DRAFT_06026 - chromate transporter, at 31,375 to 31,902 _06026 H281DRAFT_06027: H281DRAFT_06027 - AMP nucleosidase, at 31,978 to 33,504 _06027 Position (kb) 31 32Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 30.452 kb on - strand, within H281DRAFT_06024at 30.507 kb on - strand, within H281DRAFT_06024at 30.723 kb on + strandat 31.136 kb on + strandat 31.136 kb on + strand, within H281DRAFT_06025at 31.250 kb on - strand, within H281DRAFT_06025at 31.322 kb on - strandat 31.322 kb on - strandat 31.352 kb on + strandat 31.352 kb on + strandat 31.353 kb on - strandat 31.353 kb on - strandat 31.353 kb on - strandat 31.353 kb on - strandat 31.446 kb on + strand, within H281DRAFT_06026at 31.446 kb on + strand, within H281DRAFT_06026at 31.652 kb on + strand, within H281DRAFT_06026at 31.653 kb on - strand, within H281DRAFT_06026at 31.653 kb on - strand, within H281DRAFT_06026at 31.850 kb on + strandat 31.901 kb on - strandat 32.103 kb on - strandat 32.164 kb on + strand, within H281DRAFT_06027at 32.164 kb on + strand, within H281DRAFT_06027at 32.164 kb on + strand, within H281DRAFT_06027at 32.164 kb on + strand, within H281DRAFT_06027at 32.164 kb on + strand, within H281DRAFT_06027at 32.164 kb on + strand, within H281DRAFT_06027at 32.164 kb on + strand, within H281DRAFT_06027at 32.164 kb on + strand, within H281DRAFT_06027at 32.165 kb on - strand, within H281DRAFT_06027at 32.165 kb on - strand, within H281DRAFT_06027at 32.177 kb on + strand, within H281DRAFT_06027at 32.178 kb on - strand, within H281DRAFT_06027at 32.449 kb on + strand, within H281DRAFT_06027at 32.449 kb on + strand, within H281DRAFT_06027at 32.449 kb on + strand, within H281DRAFT_06027at 32.450 kb on - strand, within H281DRAFT_06027at 32.450 kb on - strand, within H281DRAFT_06027at 32.469 kb on - strand, within H281DRAFT_06027at 32.486 kb on + strand, within H281DRAFT_06027at 32.486 kb on + strand, within H281DRAFT_06027at 32.486 kb on + strand, within H281DRAFT_06027at 32.487 kb on - strand, within H281DRAFT_06027at 32.652 kb on - strand, within H281DRAFT_06027at 32.720 kb on + strand, within H281DRAFT_06027at 32.720 kb on + strand, within H281DRAFT_06027at 32.721 kb on - strand, within H281DRAFT_06027at 32.794 kb on - strand, within H281DRAFT_06027at 32.794 kb on - strand, within H281DRAFT_06027at 32.837 kb on + strand, within H281DRAFT_06027at 32.846 kb on + strand, within H281DRAFT_06027at 32.847 kb on - strand, within H281DRAFT_06027at 32.864 kb on + strand, within H281DRAFT_06027at 32.865 kb on - strand, within H281DRAFT_06027at 32.865 kb on - strand, within H281DRAFT_06027at 32.865 kb on - strand, within H281DRAFT_06027at 32.865 kb on - strand, within H281DRAFT_06027at 32.897 kb on + strand, within H281DRAFT_06027

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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30,452 - H281DRAFT_06024 0.72 +0.4
30,507 - H281DRAFT_06024 0.78 -0.6
30,723 + -0.1
31,136 + +1.2
31,136 + H281DRAFT_06025 0.57 +0.7
31,250 - H281DRAFT_06025 0.77 +0.8
31,322 - +0.5
31,322 - +0.6
31,352 + +1.2
31,352 + -0.3
31,353 - -0.5
31,353 - +0.8
31,353 - -0.7
31,353 - +1.5
31,446 + H281DRAFT_06026 0.13 -0.1
31,446 + H281DRAFT_06026 0.13 -0.6
31,652 + H281DRAFT_06026 0.52 -1.6
31,653 - H281DRAFT_06026 0.53 +1.0
31,653 - H281DRAFT_06026 0.53 +1.2
31,850 + +0.7
31,901 - -0.9
32,103 - -0.5
32,164 + H281DRAFT_06027 0.12 -1.6
32,164 + H281DRAFT_06027 0.12 -1.5
32,164 + H281DRAFT_06027 0.12 -0.9
32,164 + H281DRAFT_06027 0.12 -1.9
32,164 + H281DRAFT_06027 0.12 -0.6
32,164 + H281DRAFT_06027 0.12 +0.5
32,164 + H281DRAFT_06027 0.12 +1.2
32,164 + H281DRAFT_06027 0.12 -1.7
32,165 - H281DRAFT_06027 0.12 -1.5
32,165 - H281DRAFT_06027 0.12 +0.6
32,177 + H281DRAFT_06027 0.13 -1.2
32,178 - H281DRAFT_06027 0.13 -0.5
32,449 + H281DRAFT_06027 0.31 -1.8
32,449 + H281DRAFT_06027 0.31 -0.3
32,449 + H281DRAFT_06027 0.31 -0.8
32,450 - H281DRAFT_06027 0.31 -3.6
32,450 - H281DRAFT_06027 0.31 -2.2
32,469 - H281DRAFT_06027 0.32 -1.5
32,486 + H281DRAFT_06027 0.33 -1.2
32,486 + H281DRAFT_06027 0.33 -2.5
32,486 + H281DRAFT_06027 0.33 -0.2
32,487 - H281DRAFT_06027 0.33 -4.4
32,652 - H281DRAFT_06027 0.44 -1.3
32,720 + H281DRAFT_06027 0.49 -0.9
32,720 + H281DRAFT_06027 0.49 -1.8
32,721 - H281DRAFT_06027 0.49 -1.6
32,794 - H281DRAFT_06027 0.53 -2.3
32,794 - H281DRAFT_06027 0.53 -1.9
32,837 + H281DRAFT_06027 0.56 -0.8
32,846 + H281DRAFT_06027 0.57 -0.8
32,847 - H281DRAFT_06027 0.57 -1.8
32,864 + H281DRAFT_06027 0.58 -0.1
32,865 - H281DRAFT_06027 0.58 -1.6
32,865 - H281DRAFT_06027 0.58 -1.8
32,865 - H281DRAFT_06027 0.58 -0.6
32,865 - H281DRAFT_06027 0.58 -0.9
32,897 + H281DRAFT_06027 0.60 -1.0

Or see this region's nucleotide sequence