Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06004

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06003 and H281DRAFT_06004 are separated by 84 nucleotidesH281DRAFT_06004 and H281DRAFT_06005 are separated by 440 nucleotides H281DRAFT_06003: H281DRAFT_06003 - Pimeloyl-ACP methyl ester carboxylesterase, at 4,408 to 5,202 _06003 H281DRAFT_06004: H281DRAFT_06004 - protein of unknown function (DUF4148), at 5,287 to 5,637 _06004 H281DRAFT_06005: H281DRAFT_06005 - methyltransferase, FkbM family, at 6,078 to 6,788 _06005 Position (kb) 5 6Strain fitness (log2 ratio) -1 0 1 2at 4.402 kb on - strandat 4.526 kb on + strand, within H281DRAFT_06003at 4.736 kb on + strand, within H281DRAFT_06003at 4.904 kb on + strand, within H281DRAFT_06003at 4.905 kb on - strand, within H281DRAFT_06003at 4.908 kb on + strand, within H281DRAFT_06003at 5.317 kb on - strandat 6.079 kb on + strandat 6.079 kb on + strandat 6.108 kb on - strandat 6.112 kb on - strandat 6.152 kb on + strand, within H281DRAFT_06005at 6.173 kb on - strand, within H281DRAFT_06005at 6.212 kb on + strand, within H281DRAFT_06005at 6.247 kb on + strand, within H281DRAFT_06005at 6.389 kb on + strand, within H281DRAFT_06005at 6.390 kb on - strand, within H281DRAFT_06005at 6.390 kb on - strand, within H281DRAFT_06005at 6.446 kb on - strand, within H281DRAFT_06005at 6.446 kb on - strand, within H281DRAFT_06005at 6.461 kb on - strand, within H281DRAFT_06005at 6.590 kb on - strand, within H281DRAFT_06005at 6.599 kb on - strand, within H281DRAFT_06005at 6.599 kb on - strand, within H281DRAFT_06005at 6.602 kb on + strand, within H281DRAFT_06005at 6.602 kb on + strand, within H281DRAFT_06005

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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4,402 - -0.6
4,526 + H281DRAFT_06003 0.15 +0.8
4,736 + H281DRAFT_06003 0.41 +1.3
4,904 + H281DRAFT_06003 0.62 +1.6
4,905 - H281DRAFT_06003 0.63 +0.9
4,908 + H281DRAFT_06003 0.63 +1.2
5,317 - +0.1
6,079 + +0.5
6,079 + +1.1
6,108 - +1.3
6,112 - -0.4
6,152 + H281DRAFT_06005 0.10 +0.9
6,173 - H281DRAFT_06005 0.13 -0.4
6,212 + H281DRAFT_06005 0.19 +0.6
6,247 + H281DRAFT_06005 0.24 +1.8
6,389 + H281DRAFT_06005 0.44 +0.1
6,390 - H281DRAFT_06005 0.44 -0.6
6,390 - H281DRAFT_06005 0.44 -0.5
6,446 - H281DRAFT_06005 0.52 +0.1
6,446 - H281DRAFT_06005 0.52 -0.2
6,461 - H281DRAFT_06005 0.54 +0.4
6,590 - H281DRAFT_06005 0.72 -0.3
6,599 - H281DRAFT_06005 0.73 -0.3
6,599 - H281DRAFT_06005 0.73 -0.3
6,602 + H281DRAFT_06005 0.74 -0.5
6,602 + H281DRAFT_06005 0.74 +0.7

Or see this region's nucleotide sequence