Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05830

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05829 and H281DRAFT_05830 are separated by 798 nucleotidesH281DRAFT_05830 and H281DRAFT_05831 are separated by 238 nucleotides H281DRAFT_05829: H281DRAFT_05829 - hypothetical protein (DUF2242), at 105,853 to 106,545 _05829 H281DRAFT_05830: H281DRAFT_05830 - hypothetical protein, at 107,344 to 107,595 _05830 H281DRAFT_05831: H281DRAFT_05831 - transcriptional regulator, IclR family, at 107,834 to 108,586 _05831 Position (kb) 107 108Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 106.369 kb on + strand, within H281DRAFT_05829at 106.369 kb on + strand, within H281DRAFT_05829at 106.370 kb on - strand, within H281DRAFT_05829at 106.536 kb on - strandat 106.536 kb on - strandat 106.536 kb on - strandat 106.536 kb on - strandat 106.538 kb on + strandat 106.539 kb on - strandat 106.539 kb on - strandat 106.539 kb on - strandat 106.637 kb on - strandat 106.637 kb on - strandat 106.637 kb on - strandat 106.637 kb on - strandat 106.640 kb on + strandat 106.640 kb on + strandat 106.640 kb on + strandat 106.647 kb on + strandat 106.647 kb on + strandat 106.649 kb on + strandat 106.649 kb on + strandat 106.649 kb on + strandat 106.649 kb on + strandat 106.650 kb on - strandat 106.650 kb on - strandat 106.650 kb on - strandat 106.650 kb on - strandat 106.650 kb on - strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.653 kb on + strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.654 kb on - strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.657 kb on + strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.658 kb on - strandat 106.660 kb on + strandat 106.663 kb on + strandat 106.663 kb on + strandat 106.664 kb on - strandat 106.668 kb on - strandat 106.677 kb on + strandat 106.713 kb on - strandat 106.713 kb on - strandat 106.722 kb on + strandat 106.722 kb on + strandat 106.722 kb on + strandat 106.737 kb on - strandat 106.813 kb on - strandat 106.852 kb on + strandat 106.852 kb on + strandat 106.853 kb on - strandat 106.857 kb on + strandat 106.878 kb on - strandat 106.878 kb on - strandat 106.881 kb on + strandat 106.882 kb on - strandat 106.952 kb on - strandat 106.952 kb on - strandat 107.033 kb on + strandat 107.033 kb on + strandat 107.033 kb on + strandat 107.033 kb on + strandat 107.034 kb on - strandat 107.034 kb on - strandat 107.034 kb on - strandat 107.037 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.054 kb on + strandat 107.073 kb on + strandat 107.074 kb on - strandat 107.074 kb on - strandat 107.079 kb on + strandat 107.079 kb on + strandat 107.080 kb on - strandat 107.080 kb on - strandat 107.540 kb on + strand, within H281DRAFT_05830at 107.540 kb on + strand, within H281DRAFT_05830at 107.573 kb on - strandat 107.606 kb on - strandat 107.969 kb on + strand, within H281DRAFT_05831at 107.969 kb on + strand, within H281DRAFT_05831at 108.059 kb on + strand, within H281DRAFT_05831at 108.170 kb on + strand, within H281DRAFT_05831at 108.170 kb on + strand, within H281DRAFT_05831at 108.171 kb on - strand, within H281DRAFT_05831at 108.171 kb on - strand, within H281DRAFT_05831at 108.312 kb on - strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.341 kb on + strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.342 kb on - strand, within H281DRAFT_05831at 108.395 kb on + strand, within H281DRAFT_05831at 108.404 kb on - strand, within H281DRAFT_05831at 108.579 kb on + strandat 108.579 kb on + strandat 108.580 kb on - strandat 108.584 kb on + strandat 108.584 kb on + strandat 108.595 kb on - strandat 108.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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106,369 + H281DRAFT_05829 0.74 -0.6
106,369 + H281DRAFT_05829 0.74 -1.2
106,370 - H281DRAFT_05829 0.75 -0.4
106,536 - +1.6
106,536 - +0.3
106,536 - +1.0
106,536 - +0.3
106,538 + -0.5
106,539 - +1.1
106,539 - -1.1
106,539 - +0.8
106,637 - +1.0
106,637 - +0.7
106,637 - +0.1
106,637 - -0.8
106,640 + +0.5
106,640 + -0.0
106,640 + +0.6
106,647 + +2.0
106,647 + -0.6
106,649 + +0.3
106,649 + +0.1
106,649 + -0.3
106,649 + +1.3
106,650 - -1.7
106,650 - +0.4
106,650 - +1.1
106,650 - -0.4
106,650 - +1.0
106,653 + +0.3
106,653 + +0.5
106,653 + +0.7
106,653 + +0.7
106,653 + -0.4
106,653 + +0.2
106,653 + +0.5
106,653 + +0.2
106,654 - -0.4
106,654 - +0.2
106,654 - +0.3
106,654 - +0.1
106,654 - -0.5
106,654 - +0.5
106,654 - +0.4
106,654 - +1.0
106,654 - -0.0
106,654 - -0.0
106,654 - +0.2
106,654 - -0.2
106,654 - -1.8
106,654 - -0.4
106,654 - +2.6
106,657 + +0.2
106,657 + +0.9
106,657 + +0.6
106,657 + -0.3
106,657 + -0.4
106,657 + +0.1
106,657 + +1.3
106,657 + -0.2
106,657 + +0.8
106,657 + +0.4
106,657 + +0.6
106,658 - -0.6
106,658 - +0.1
106,658 - +0.8
106,658 - -0.7
106,658 - -0.0
106,658 - +0.2
106,660 + +1.5
106,663 + +1.1
106,663 + +0.3
106,664 - -0.1
106,668 - +0.7
106,677 + +0.9
106,713 - +0.8
106,713 - +1.3
106,722 + +1.0
106,722 + -0.1
106,722 + +0.0
106,737 - +0.3
106,813 - -0.2
106,852 + -0.9
106,852 + +1.2
106,853 - +1.1
106,857 + -0.3
106,878 - +0.3
106,878 - -2.4
106,881 + -1.5
106,882 - +0.3
106,952 - +0.4
106,952 - -2.0
107,033 + +0.3
107,033 + +0.1
107,033 + +0.2
107,033 + -0.1
107,034 - -0.1
107,034 - +0.0
107,034 - +0.9
107,037 + +0.4
107,054 + +3.3
107,054 + +0.1
107,054 + +1.3
107,054 + +0.0
107,054 + +1.0
107,054 + +0.6
107,073 + +3.3
107,074 - -0.2
107,074 - +0.5
107,079 + +1.0
107,079 + -1.8
107,080 - -1.1
107,080 - +0.9
107,540 + H281DRAFT_05830 0.78 +1.4
107,540 + H281DRAFT_05830 0.78 -0.9
107,573 - +0.6
107,606 - -1.3
107,969 + H281DRAFT_05831 0.18 -1.1
107,969 + H281DRAFT_05831 0.18 +0.0
108,059 + H281DRAFT_05831 0.30 +0.6
108,170 + H281DRAFT_05831 0.45 +0.6
108,170 + H281DRAFT_05831 0.45 +0.0
108,171 - H281DRAFT_05831 0.45 -0.1
108,171 - H281DRAFT_05831 0.45 +0.2
108,312 - H281DRAFT_05831 0.63 -1.9
108,341 + H281DRAFT_05831 0.67 +0.5
108,341 + H281DRAFT_05831 0.67 +0.5
108,341 + H281DRAFT_05831 0.67 +0.5
108,341 + H281DRAFT_05831 0.67 +0.6
108,341 + H281DRAFT_05831 0.67 -0.4
108,342 - H281DRAFT_05831 0.67 -1.6
108,342 - H281DRAFT_05831 0.67 -0.4
108,342 - H281DRAFT_05831 0.67 +0.3
108,342 - H281DRAFT_05831 0.67 +0.7
108,395 + H281DRAFT_05831 0.75 +1.0
108,404 - H281DRAFT_05831 0.76 +0.7
108,579 + +0.4
108,579 + -0.2
108,580 - -0.7
108,584 + -0.2
108,584 + +5.3
108,595 - -0.0
108,595 - -1.8

Or see this region's nucleotide sequence