Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05352

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05351 and H281DRAFT_05352 are separated by 283 nucleotidesH281DRAFT_05352 and H281DRAFT_05353 are separated by 2 nucleotidesH281DRAFT_05353 and H281DRAFT_05354 are separated by 256 nucleotides H281DRAFT_05351: H281DRAFT_05351 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 103,874 to 104,728 _05351 H281DRAFT_05352: H281DRAFT_05352 - serine/threonine-protein kinase HipA, at 105,012 to 106,352 _05352 H281DRAFT_05353: H281DRAFT_05353 - HTH-type transcriptional regulator / antitoxin HipB, at 106,355 to 106,609 _05353 H281DRAFT_05354: H281DRAFT_05354 - Glycine/D-amino acid oxidase (deaminating), at 106,866 to 108,206 _05354 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2 3at 104.301 kb on + strand, within H281DRAFT_05351at 104.313 kb on + strand, within H281DRAFT_05351at 104.526 kb on + strand, within H281DRAFT_05351at 104.728 kb on + strandat 104.728 kb on + strandat 104.728 kb on + strandat 104.729 kb on - strandat 104.729 kb on - strandat 104.782 kb on - strandat 104.819 kb on - strandat 104.840 kb on - strandat 104.871 kb on - strandat 104.928 kb on - strandat 105.124 kb on - strandat 105.124 kb on - strandat 105.124 kb on - strandat 105.203 kb on + strand, within H281DRAFT_05352at 105.204 kb on - strand, within H281DRAFT_05352at 105.204 kb on - strand, within H281DRAFT_05352at 105.300 kb on - strandat 105.556 kb on + strand, within H281DRAFT_05352at 105.694 kb on + strand, within H281DRAFT_05352at 105.695 kb on - strand, within H281DRAFT_05352at 105.705 kb on + strand, within H281DRAFT_05352at 105.792 kb on - strand, within H281DRAFT_05352at 105.990 kb on + strand, within H281DRAFT_05352at 106.151 kb on - strand, within H281DRAFT_05352at 106.252 kb on + strandat 106.412 kb on + strand, within H281DRAFT_05353at 106.696 kb on - strandat 106.838 kb on + strandat 106.839 kb on - strandat 106.850 kb on + strandat 106.980 kb on + strandat 106.981 kb on - strandat 106.981 kb on - strandat 106.981 kb on - strandat 106.981 kb on - strandat 107.116 kb on + strand, within H281DRAFT_05354at 107.116 kb on + strand, within H281DRAFT_05354at 107.184 kb on + strand, within H281DRAFT_05354at 107.185 kb on - strand, within H281DRAFT_05354at 107.185 kb on - strand, within H281DRAFT_05354at 107.265 kb on - strand, within H281DRAFT_05354at 107.332 kb on - strand, within H281DRAFT_05354

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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104,301 + H281DRAFT_05351 0.50 +0.1
104,313 + H281DRAFT_05351 0.51 +1.1
104,526 + H281DRAFT_05351 0.76 -2.0
104,728 + +0.2
104,728 + +0.2
104,728 + +0.1
104,729 - +0.6
104,729 - +0.1
104,782 - +0.7
104,819 - +1.1
104,840 - +0.6
104,871 - +0.9
104,928 - +0.3
105,124 - -0.1
105,124 - +2.0
105,124 - +0.4
105,203 + H281DRAFT_05352 0.14 +0.7
105,204 - H281DRAFT_05352 0.14 +1.8
105,204 - H281DRAFT_05352 0.14 +1.9
105,300 - -1.8
105,556 + H281DRAFT_05352 0.41 -0.0
105,694 + H281DRAFT_05352 0.51 +1.4
105,695 - H281DRAFT_05352 0.51 +1.0
105,705 + H281DRAFT_05352 0.52 +0.4
105,792 - H281DRAFT_05352 0.58 -0.7
105,990 + H281DRAFT_05352 0.73 +1.2
106,151 - H281DRAFT_05352 0.85 +0.2
106,252 + +0.1
106,412 + H281DRAFT_05353 0.22 -1.5
106,696 - +0.9
106,838 + +1.1
106,839 - -2.0
106,850 + +0.7
106,980 + +0.4
106,981 - -0.4
106,981 - +0.3
106,981 - +3.4
106,981 - -2.2
107,116 + H281DRAFT_05354 0.19 +0.6
107,116 + H281DRAFT_05354 0.19 -0.2
107,184 + H281DRAFT_05354 0.24 +0.5
107,185 - H281DRAFT_05354 0.24 +0.1
107,185 - H281DRAFT_05354 0.24 +1.2
107,265 - H281DRAFT_05354 0.30 -0.9
107,332 - H281DRAFT_05354 0.35 +0.4

Or see this region's nucleotide sequence