Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05108 and H281DRAFT_05109 are separated by 100 nucleotides H281DRAFT_05109 and H281DRAFT_05110 are separated by 49 nucleotides H281DRAFT_05110 and H281DRAFT_05111 are separated by 347 nucleotides
H281DRAFT_05108: H281DRAFT_05108 - membrane fusion protein, multidrug efflux system, at 54,725 to 55,981
_05108
H281DRAFT_05109: H281DRAFT_05109 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 56,082 to 57,650
_05109
H281DRAFT_05110: H281DRAFT_05110 - transcriptional regulator, MarR family, at 57,700 to 58,215
_05110
H281DRAFT_05111: H281DRAFT_05111 - GTP-binding protein, at 58,563 to 60,389
_05111
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 55.123 kb on - strand, within H281DRAFT_05108 at 55.223 kb on - strand, within H281DRAFT_05108 at 55.330 kb on - strand, within H281DRAFT_05108 at 55.584 kb on + strand, within H281DRAFT_05108 at 55.833 kb on + strand, within H281DRAFT_05108 at 55.834 kb on - strand, within H281DRAFT_05108 at 55.836 kb on + strand, within H281DRAFT_05108 at 55.845 kb on + strand, within H281DRAFT_05108 at 55.845 kb on + strand, within H281DRAFT_05108 at 55.845 kb on + strand, within H281DRAFT_05108 at 56.051 kb on + strand at 56.285 kb on + strand, within H281DRAFT_05109 at 56.359 kb on + strand, within H281DRAFT_05109 at 56.360 kb on - strand, within H281DRAFT_05109 at 56.380 kb on + strand, within H281DRAFT_05109 at 56.380 kb on + strand, within H281DRAFT_05109 at 56.497 kb on + strand, within H281DRAFT_05109 at 56.497 kb on + strand, within H281DRAFT_05109 at 56.497 kb on + strand, within H281DRAFT_05109 at 56.498 kb on - strand, within H281DRAFT_05109 at 56.498 kb on - strand, within H281DRAFT_05109 at 56.498 kb on - strand, within H281DRAFT_05109 at 56.498 kb on - strand, within H281DRAFT_05109 at 56.748 kb on - strand, within H281DRAFT_05109 at 56.801 kb on + strand, within H281DRAFT_05109 at 56.802 kb on - strand, within H281DRAFT_05109 at 56.879 kb on - strand, within H281DRAFT_05109 at 56.936 kb on + strand, within H281DRAFT_05109 at 57.058 kb on + strand, within H281DRAFT_05109 at 57.058 kb on + strand, within H281DRAFT_05109 at 57.059 kb on - strand, within H281DRAFT_05109 at 57.078 kb on - strand, within H281DRAFT_05109 at 57.079 kb on + strand, within H281DRAFT_05109 at 57.080 kb on - strand, within H281DRAFT_05109 at 57.080 kb on - strand, within H281DRAFT_05109 at 57.080 kb on - strand, within H281DRAFT_05109 at 57.195 kb on + strand at 57.196 kb on - strand at 57.196 kb on - strand, within H281DRAFT_05109 at 57.234 kb on - strand, within H281DRAFT_05109 at 57.235 kb on + strand, within H281DRAFT_05109 at 57.236 kb on - strand, within H281DRAFT_05109 at 57.236 kb on - strand, within H281DRAFT_05109 at 57.301 kb on + strand, within H281DRAFT_05109 at 57.302 kb on - strand, within H281DRAFT_05109 at 57.302 kb on - strand, within H281DRAFT_05109 at 57.302 kb on - strand, within H281DRAFT_05109 at 57.349 kb on + strand, within H281DRAFT_05109 at 57.511 kb on + strand at 57.511 kb on + strand at 57.511 kb on + strand at 57.511 kb on + strand at 57.512 kb on - strand at 57.512 kb on - strand at 57.556 kb on + strand at 57.556 kb on + strand at 57.838 kb on + strand, within H281DRAFT_05110 at 57.839 kb on - strand, within H281DRAFT_05110 at 58.149 kb on - strand, within H281DRAFT_05110 at 58.254 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.359 kb on + strand at 58.359 kb on + strand at 58.359 kb on + strand at 58.360 kb on - strand at 58.372 kb on + strand at 58.373 kb on - strand at 58.373 kb on - strand at 58.373 kb on - strand at 58.405 kb on + strand at 58.406 kb on - strand at 58.415 kb on + strand at 58.415 kb on + strand at 58.441 kb on + strand at 58.507 kb on + strand at 58.508 kb on - strand at 58.562 kb on + strand at 58.562 kb on + strand at 58.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 55,123 - H281DRAFT_05108 0.32 -1.5 55,223 - H281DRAFT_05108 0.40 -0.6 55,330 - H281DRAFT_05108 0.48 -0.1 55,584 + H281DRAFT_05108 0.68 -1.9 55,833 + H281DRAFT_05108 0.88 +0.2 55,834 - H281DRAFT_05108 0.88 -0.4 55,836 + H281DRAFT_05108 0.88 -1.5 55,845 + H281DRAFT_05108 0.89 +0.2 55,845 + H281DRAFT_05108 0.89 -0.3 55,845 + H281DRAFT_05108 0.89 -0.3 56,051 + -0.8 56,285 + H281DRAFT_05109 0.13 +0.7 56,359 + H281DRAFT_05109 0.18 -0.8 56,360 - H281DRAFT_05109 0.18 -0.2 56,380 + H281DRAFT_05109 0.19 -0.7 56,380 + H281DRAFT_05109 0.19 -2.3 56,497 + H281DRAFT_05109 0.26 -0.3 56,497 + H281DRAFT_05109 0.26 -0.1 56,497 + H281DRAFT_05109 0.26 -1.3 56,498 - H281DRAFT_05109 0.27 -1.3 56,498 - H281DRAFT_05109 0.27 -1.4 56,498 - H281DRAFT_05109 0.27 -1.8 56,498 - H281DRAFT_05109 0.27 -0.9 56,748 - H281DRAFT_05109 0.42 +0.2 56,801 + H281DRAFT_05109 0.46 +0.1 56,802 - H281DRAFT_05109 0.46 -0.2 56,879 - H281DRAFT_05109 0.51 -0.6 56,936 + H281DRAFT_05109 0.54 -0.3 57,058 + H281DRAFT_05109 0.62 +0.1 57,058 + H281DRAFT_05109 0.62 +0.1 57,059 - H281DRAFT_05109 0.62 -0.7 57,078 - H281DRAFT_05109 0.63 -0.5 57,079 + H281DRAFT_05109 0.64 -1.3 57,080 - H281DRAFT_05109 0.64 -0.5 57,080 - H281DRAFT_05109 0.64 +0.6 57,080 - H281DRAFT_05109 0.64 -1.1 57,195 + +4.0 57,196 - -0.8 57,196 - H281DRAFT_05109 0.71 -1.1 57,234 - H281DRAFT_05109 0.73 -0.9 57,235 + H281DRAFT_05109 0.73 +0.4 57,236 - H281DRAFT_05109 0.74 -0.2 57,236 - H281DRAFT_05109 0.74 -1.9 57,301 + H281DRAFT_05109 0.78 -1.7 57,302 - H281DRAFT_05109 0.78 -0.1 57,302 - H281DRAFT_05109 0.78 +0.3 57,302 - H281DRAFT_05109 0.78 -0.8 57,349 + H281DRAFT_05109 0.81 -0.4 57,511 + -0.6 57,511 + -0.1 57,511 + +0.1 57,511 + +0.7 57,512 - -0.8 57,512 - -0.4 57,556 + +0.2 57,556 + -0.1 57,838 + H281DRAFT_05110 0.27 -0.2 57,839 - H281DRAFT_05110 0.27 +0.8 58,149 - H281DRAFT_05110 0.87 +0.8 58,254 - +0.3 58,357 - +1.0 58,357 - -0.2 58,357 - +0.3 58,359 + -0.3 58,359 + -0.2 58,359 + +0.2 58,360 - +1.1 58,372 + -1.0 58,373 - +0.7 58,373 - +1.4 58,373 - -0.1 58,405 + -0.3 58,406 - +0.5 58,415 + +0.4 58,415 + -0.2 58,441 + -0.4 58,507 + +1.0 58,508 - -1.2 58,562 + -0.1 58,562 + +0.2 58,620 - +1.4
Or see this region's nucleotide sequence