Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05019

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05018 and H281DRAFT_05019 are separated by 264 nucleotidesH281DRAFT_05019 and H281DRAFT_05020 are separated by 168 nucleotides H281DRAFT_05018: H281DRAFT_05018 - TIGR03118 family protein, at 201,748 to 202,857 _05018 H281DRAFT_05019: H281DRAFT_05019 - hypothetical protein, at 203,122 to 204,849 _05019 H281DRAFT_05020: H281DRAFT_05020 - Signal transduction histidine kinase, at 205,018 to 206,103 _05020 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2at 202.301 kb on + strand, within H281DRAFT_05018at 202.302 kb on - strand, within H281DRAFT_05018at 202.347 kb on - strand, within H281DRAFT_05018at 202.817 kb on - strandat 202.837 kb on + strandat 202.851 kb on - strandat 202.851 kb on - strandat 202.891 kb on - strandat 203.026 kb on + strandat 203.044 kb on - strandat 203.044 kb on - strandat 203.072 kb on + strandat 203.251 kb on + strandat 203.846 kb on + strand, within H281DRAFT_05019at 203.863 kb on + strand, within H281DRAFT_05019at 203.863 kb on + strand, within H281DRAFT_05019at 204.046 kb on + strand, within H281DRAFT_05019at 204.173 kb on + strand, within H281DRAFT_05019at 204.315 kb on + strand, within H281DRAFT_05019at 204.354 kb on + strand, within H281DRAFT_05019at 204.948 kb on - strandat 205.107 kb on + strandat 205.811 kb on + strand, within H281DRAFT_05020

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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202,301 + H281DRAFT_05018 0.50 -1.9
202,302 - H281DRAFT_05018 0.50 -1.1
202,347 - H281DRAFT_05018 0.54 +0.3
202,817 - +0.1
202,837 + +2.1
202,851 - -0.3
202,851 - -0.4
202,891 - -1.1
203,026 + +0.9
203,044 - +0.1
203,044 - +0.0
203,072 + +0.1
203,251 + -0.3
203,846 + H281DRAFT_05019 0.42 -0.3
203,863 + H281DRAFT_05019 0.43 -2.5
203,863 + H281DRAFT_05019 0.43 -0.4
204,046 + H281DRAFT_05019 0.53 -1.2
204,173 + H281DRAFT_05019 0.61 +0.3
204,315 + H281DRAFT_05019 0.69 -0.1
204,354 + H281DRAFT_05019 0.71 +0.5
204,948 - +0.2
205,107 + -0.7
205,811 + H281DRAFT_05020 0.73 +0.9

Or see this region's nucleotide sequence