Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04889

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04888 and H281DRAFT_04889 are separated by 59 nucleotidesH281DRAFT_04889 and H281DRAFT_04890 are separated by 76 nucleotides H281DRAFT_04888: H281DRAFT_04888 - protein of unknown function (DUF4118), at 33,012 to 34,415 _04888 H281DRAFT_04889: H281DRAFT_04889 - hypothetical protein, at 34,475 to 35,026 _04889 H281DRAFT_04890: H281DRAFT_04890 - Tetratricopeptide repeat-containing protein, at 35,103 to 38,999 _04890 Position (kb) 34 35 36Strain fitness (log2 ratio) -1 0 1at 33.828 kb on - strand, within H281DRAFT_04888at 33.941 kb on - strand, within H281DRAFT_04888at 33.953 kb on + strand, within H281DRAFT_04888at 33.954 kb on - strand, within H281DRAFT_04888at 34.023 kb on - strand, within H281DRAFT_04888at 34.656 kb on + strand, within H281DRAFT_04889at 34.689 kb on + strand, within H281DRAFT_04889at 35.070 kb on - strandat 35.250 kb on + strandat 35.302 kb on + strandat 35.303 kb on - strandat 35.352 kb on - strandat 35.353 kb on + strandat 35.618 kb on - strand, within H281DRAFT_04890at 35.830 kb on + strand, within H281DRAFT_04890at 35.831 kb on - strand, within H281DRAFT_04890at 35.972 kb on - strand, within H281DRAFT_04890

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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33,828 - H281DRAFT_04888 0.58 +0.2
33,941 - H281DRAFT_04888 0.66 +1.4
33,953 + H281DRAFT_04888 0.67 +0.2
33,954 - H281DRAFT_04888 0.67 +1.1
34,023 - H281DRAFT_04888 0.72 +0.1
34,656 + H281DRAFT_04889 0.33 -0.2
34,689 + H281DRAFT_04889 0.39 -1.6
35,070 - -0.3
35,250 + +0.0
35,302 + -0.2
35,303 - +0.7
35,352 - -0.8
35,353 + +0.4
35,618 - H281DRAFT_04890 0.13 -0.3
35,830 + H281DRAFT_04890 0.19 -0.6
35,831 - H281DRAFT_04890 0.19 -1.6
35,972 - H281DRAFT_04890 0.22 +0.4

Or see this region's nucleotide sequence