Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04844

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04843 and H281DRAFT_04844 overlap by 4 nucleotidesH281DRAFT_04844 and H281DRAFT_04845 are separated by 55 nucleotides H281DRAFT_04843: H281DRAFT_04843 - UDP-glucose 4-epimerase, at 283,808 to 284,740 _04843 H281DRAFT_04844: H281DRAFT_04844 - Glycosyltransferase, GT2 family, at 284,737 to 286,635 _04844 H281DRAFT_04845: H281DRAFT_04845 - dolichol-phosphate mannosyltransferase, at 286,691 to 287,821 _04845 Position (kb) 284 285 286 287Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 283.756 kb on - strandat 284.751 kb on + strandat 284.846 kb on + strandat 284.889 kb on + strandat 284.889 kb on + strandat 284.889 kb on + strandat 284.890 kb on - strandat 284.891 kb on + strandat 284.891 kb on + strandat 284.892 kb on - strandat 284.967 kb on - strand, within H281DRAFT_04844at 284.967 kb on - strand, within H281DRAFT_04844at 284.987 kb on + strand, within H281DRAFT_04844at 284.994 kb on + strand, within H281DRAFT_04844at 284.994 kb on + strand, within H281DRAFT_04844at 284.995 kb on - strand, within H281DRAFT_04844at 285.086 kb on + strand, within H281DRAFT_04844at 285.087 kb on - strand, within H281DRAFT_04844at 285.259 kb on + strand, within H281DRAFT_04844at 285.260 kb on - strand, within H281DRAFT_04844at 285.346 kb on - strand, within H281DRAFT_04844at 285.413 kb on + strand, within H281DRAFT_04844at 285.414 kb on - strand, within H281DRAFT_04844at 285.477 kb on - strand, within H281DRAFT_04844at 285.536 kb on + strand, within H281DRAFT_04844at 285.536 kb on + strand, within H281DRAFT_04844at 285.537 kb on - strand, within H281DRAFT_04844at 285.537 kb on - strand, within H281DRAFT_04844at 285.537 kb on - strand, within H281DRAFT_04844at 285.537 kb on - strand, within H281DRAFT_04844at 285.537 kb on - strand, within H281DRAFT_04844at 285.540 kb on + strand, within H281DRAFT_04844at 285.540 kb on + strand, within H281DRAFT_04844at 285.541 kb on - strand, within H281DRAFT_04844at 285.541 kb on - strand, within H281DRAFT_04844at 285.654 kb on - strand, within H281DRAFT_04844at 285.741 kb on - strand, within H281DRAFT_04844at 285.795 kb on - strand, within H281DRAFT_04844at 285.863 kb on + strandat 285.864 kb on - strand, within H281DRAFT_04844at 285.887 kb on - strand, within H281DRAFT_04844at 285.887 kb on - strand, within H281DRAFT_04844at 285.959 kb on + strand, within H281DRAFT_04844at 285.992 kb on + strand, within H281DRAFT_04844at 286.089 kb on - strand, within H281DRAFT_04844at 286.183 kb on - strand, within H281DRAFT_04844at 286.183 kb on - strand, within H281DRAFT_04844at 286.215 kb on + strand, within H281DRAFT_04844at 286.215 kb on + strand, within H281DRAFT_04844at 286.236 kb on - strandat 286.307 kb on + strand, within H281DRAFT_04844at 286.348 kb on + strand, within H281DRAFT_04844at 286.364 kb on + strand, within H281DRAFT_04844at 286.364 kb on + strand, within H281DRAFT_04844at 286.365 kb on - strand, within H281DRAFT_04844at 286.379 kb on - strand, within H281DRAFT_04844at 286.399 kb on - strand, within H281DRAFT_04844at 286.399 kb on - strand, within H281DRAFT_04844at 286.417 kb on + strand, within H281DRAFT_04844at 286.457 kb on + strandat 286.457 kb on + strandat 286.625 kb on + strandat 286.626 kb on - strandat 286.667 kb on + strandat 286.668 kb on - strandat 286.668 kb on - strandat 286.668 kb on - strandat 286.693 kb on - strandat 286.725 kb on + strandat 286.825 kb on + strand, within H281DRAFT_04845at 286.845 kb on + strand, within H281DRAFT_04845at 286.913 kb on - strand, within H281DRAFT_04845at 286.913 kb on - strand, within H281DRAFT_04845at 286.966 kb on + strand, within H281DRAFT_04845at 286.967 kb on - strand, within H281DRAFT_04845at 286.967 kb on - strand, within H281DRAFT_04845at 287.055 kb on - strand, within H281DRAFT_04845at 287.109 kb on + strand, within H281DRAFT_04845at 287.110 kb on - strand, within H281DRAFT_04845at 287.393 kb on - strand, within H281DRAFT_04845at 287.413 kb on - strand, within H281DRAFT_04845at 287.457 kb on + strand, within H281DRAFT_04845at 287.458 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.585 kb on - strand, within H281DRAFT_04845at 287.631 kb on + strand, within H281DRAFT_04845at 287.632 kb on - strand, within H281DRAFT_04845

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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283,756 - -0.1
284,751 + +0.5
284,846 + +1.5
284,889 + +4.0
284,889 + -0.2
284,889 + +3.1
284,890 - +4.0
284,891 + +2.8
284,891 + +2.7
284,892 - +3.4
284,967 - H281DRAFT_04844 0.12 +2.5
284,967 - H281DRAFT_04844 0.12 +4.3
284,987 + H281DRAFT_04844 0.13 +3.1
284,994 + H281DRAFT_04844 0.14 +2.2
284,994 + H281DRAFT_04844 0.14 +2.7
284,995 - H281DRAFT_04844 0.14 +2.8
285,086 + H281DRAFT_04844 0.18 +2.3
285,087 - H281DRAFT_04844 0.18 +3.2
285,259 + H281DRAFT_04844 0.27 +3.0
285,260 - H281DRAFT_04844 0.28 +3.7
285,346 - H281DRAFT_04844 0.32 +2.0
285,413 + H281DRAFT_04844 0.36 +3.1
285,414 - H281DRAFT_04844 0.36 +3.8
285,477 - H281DRAFT_04844 0.39 +2.9
285,536 + H281DRAFT_04844 0.42 +2.8
285,536 + H281DRAFT_04844 0.42 +3.1
285,537 - H281DRAFT_04844 0.42 +2.6
285,537 - H281DRAFT_04844 0.42 +3.8
285,537 - H281DRAFT_04844 0.42 +2.8
285,537 - H281DRAFT_04844 0.42 +2.2
285,537 - H281DRAFT_04844 0.42 +1.8
285,540 + H281DRAFT_04844 0.42 +1.9
285,540 + H281DRAFT_04844 0.42 +2.8
285,541 - H281DRAFT_04844 0.42 +3.4
285,541 - H281DRAFT_04844 0.42 +2.3
285,654 - H281DRAFT_04844 0.48 +4.2
285,741 - H281DRAFT_04844 0.53 +2.0
285,795 - H281DRAFT_04844 0.56 +2.4
285,863 + +1.9
285,864 - H281DRAFT_04844 0.59 +0.7
285,887 - H281DRAFT_04844 0.61 +3.4
285,887 - H281DRAFT_04844 0.61 +3.0
285,959 + H281DRAFT_04844 0.64 +3.3
285,992 + H281DRAFT_04844 0.66 +2.8
286,089 - H281DRAFT_04844 0.71 +2.0
286,183 - H281DRAFT_04844 0.76 +2.5
286,183 - H281DRAFT_04844 0.76 +3.1
286,215 + H281DRAFT_04844 0.78 +2.1
286,215 + H281DRAFT_04844 0.78 +3.7
286,236 - +4.8
286,307 + H281DRAFT_04844 0.83 +3.3
286,348 + H281DRAFT_04844 0.85 +2.3
286,364 + H281DRAFT_04844 0.86 +3.2
286,364 + H281DRAFT_04844 0.86 +3.4
286,365 - H281DRAFT_04844 0.86 +2.8
286,379 - H281DRAFT_04844 0.86 +3.5
286,399 - H281DRAFT_04844 0.88 +2.5
286,399 - H281DRAFT_04844 0.88 +3.0
286,417 + H281DRAFT_04844 0.88 +2.6
286,457 + +1.9
286,457 + +2.9
286,625 + +3.0
286,626 - +1.4
286,667 + +3.5
286,668 - +2.5
286,668 - +1.2
286,668 - +0.8
286,693 - +0.7
286,725 + +2.0
286,825 + H281DRAFT_04845 0.12 +1.2
286,845 + H281DRAFT_04845 0.14 +1.7
286,913 - H281DRAFT_04845 0.20 -0.7
286,913 - H281DRAFT_04845 0.20 +1.1
286,966 + H281DRAFT_04845 0.24 +3.5
286,967 - H281DRAFT_04845 0.24 +0.7
286,967 - H281DRAFT_04845 0.24 +0.6
287,055 - H281DRAFT_04845 0.32 +1.6
287,109 + H281DRAFT_04845 0.37 +1.8
287,110 - H281DRAFT_04845 0.37 +0.9
287,393 - H281DRAFT_04845 0.62 -0.1
287,413 - H281DRAFT_04845 0.64 -0.9
287,457 + H281DRAFT_04845 0.68 +2.1
287,458 - H281DRAFT_04845 0.68 +0.3
287,585 - H281DRAFT_04845 0.79 -0.1
287,585 - H281DRAFT_04845 0.79 -0.1
287,585 - H281DRAFT_04845 0.79 -0.7
287,585 - H281DRAFT_04845 0.79 +1.3
287,585 - H281DRAFT_04845 0.79 -0.1
287,631 + H281DRAFT_04845 0.83 +2.4
287,632 - H281DRAFT_04845 0.83 +0.5

Or see this region's nucleotide sequence