Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04842

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04841 and H281DRAFT_04842 overlap by 4 nucleotidesH281DRAFT_04842 and H281DRAFT_04843 are separated by 230 nucleotides H281DRAFT_04841: H281DRAFT_04841 - Glycosyltransferase involved in cell wall bisynthesis, at 280,009 to 280,956 _04841 H281DRAFT_04842: H281DRAFT_04842 - hypothetical protein, at 280,953 to 283,577 _04842 H281DRAFT_04843: H281DRAFT_04843 - UDP-glucose 4-epimerase, at 283,808 to 284,740 _04843 Position (kb) 280 281 282 283 284Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 279.953 kb on - strandat 279.956 kb on + strandat 279.956 kb on + strandat 279.956 kb on + strandat 279.957 kb on - strandat 280.058 kb on + strandat 280.058 kb on + strandat 280.105 kb on + strand, within H281DRAFT_04841at 280.106 kb on - strand, within H281DRAFT_04841at 280.199 kb on + strand, within H281DRAFT_04841at 280.275 kb on + strand, within H281DRAFT_04841at 280.275 kb on + strand, within H281DRAFT_04841at 280.275 kb on + strand, within H281DRAFT_04841at 280.276 kb on - strand, within H281DRAFT_04841at 280.276 kb on - strand, within H281DRAFT_04841at 280.276 kb on - strand, within H281DRAFT_04841at 280.303 kb on + strand, within H281DRAFT_04841at 280.303 kb on + strand, within H281DRAFT_04841at 280.334 kb on + strand, within H281DRAFT_04841at 280.334 kb on + strand, within H281DRAFT_04841at 280.502 kb on + strand, within H281DRAFT_04841at 280.503 kb on - strand, within H281DRAFT_04841at 280.592 kb on + strand, within H281DRAFT_04841at 280.593 kb on - strandat 280.622 kb on + strand, within H281DRAFT_04841at 280.623 kb on - strand, within H281DRAFT_04841at 280.623 kb on - strand, within H281DRAFT_04841at 280.623 kb on - strand, within H281DRAFT_04841at 280.688 kb on + strand, within H281DRAFT_04841at 280.688 kb on + strand, within H281DRAFT_04841at 280.688 kb on + strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.689 kb on - strand, within H281DRAFT_04841at 280.693 kb on - strand, within H281DRAFT_04841at 280.693 kb on - strand, within H281DRAFT_04841at 280.715 kb on + strand, within H281DRAFT_04841at 280.715 kb on + strand, within H281DRAFT_04841at 280.715 kb on + strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.716 kb on - strand, within H281DRAFT_04841at 280.851 kb on - strand, within H281DRAFT_04841at 280.851 kb on - strand, within H281DRAFT_04841at 280.851 kb on - strand, within H281DRAFT_04841at 280.884 kb on + strandat 280.885 kb on - strandat 280.885 kb on - strandat 280.920 kb on - strandat 280.920 kb on - strandat 280.934 kb on - strandat 280.934 kb on - strandat 280.986 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.009 kb on + strandat 281.010 kb on - strandat 281.060 kb on - strandat 281.067 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.117 kb on + strandat 281.118 kb on - strandat 281.147 kb on + strandat 281.212 kb on + strandat 281.213 kb on - strandat 281.275 kb on + strand, within H281DRAFT_04842at 281.276 kb on - strand, within H281DRAFT_04842at 281.276 kb on - strand, within H281DRAFT_04842at 281.299 kb on + strand, within H281DRAFT_04842at 281.299 kb on + strand, within H281DRAFT_04842at 281.300 kb on - strand, within H281DRAFT_04842at 281.300 kb on - strand, within H281DRAFT_04842at 281.358 kb on + strand, within H281DRAFT_04842at 281.358 kb on + strand, within H281DRAFT_04842at 281.495 kb on - strand, within H281DRAFT_04842at 281.545 kb on + strand, within H281DRAFT_04842at 281.545 kb on + strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.546 kb on - strand, within H281DRAFT_04842at 281.630 kb on + strand, within H281DRAFT_04842at 281.630 kb on + strand, within H281DRAFT_04842at 281.630 kb on + strand, within H281DRAFT_04842at 281.631 kb on - strand, within H281DRAFT_04842at 281.631 kb on - strand, within H281DRAFT_04842at 281.631 kb on - strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.642 kb on + strand, within H281DRAFT_04842at 281.643 kb on - strand, within H281DRAFT_04842at 281.643 kb on - strand, within H281DRAFT_04842at 281.650 kb on + strand, within H281DRAFT_04842at 281.651 kb on - strand, within H281DRAFT_04842at 281.651 kb on - strand, within H281DRAFT_04842at 281.651 kb on - strand, within H281DRAFT_04842at 281.679 kb on + strand, within H281DRAFT_04842at 281.679 kb on + strand, within H281DRAFT_04842at 281.679 kb on + strand, within H281DRAFT_04842at 281.700 kb on + strand, within H281DRAFT_04842at 281.778 kb on - strand, within H281DRAFT_04842at 281.827 kb on + strand, within H281DRAFT_04842at 281.828 kb on - strand, within H281DRAFT_04842at 281.848 kb on + strand, within H281DRAFT_04842at 281.848 kb on + strand, within H281DRAFT_04842at 281.849 kb on - strand, within H281DRAFT_04842at 281.849 kb on - strand, within H281DRAFT_04842at 281.849 kb on - strand, within H281DRAFT_04842at 281.911 kb on + strand, within H281DRAFT_04842at 281.941 kb on + strand, within H281DRAFT_04842at 281.942 kb on - strand, within H281DRAFT_04842at 281.942 kb on - strand, within H281DRAFT_04842at 281.995 kb on + strand, within H281DRAFT_04842at 281.995 kb on + strand, within H281DRAFT_04842at 281.995 kb on + strand, within H281DRAFT_04842at 281.996 kb on - strand, within H281DRAFT_04842at 281.996 kb on - strand, within H281DRAFT_04842at 282.026 kb on - strand, within H281DRAFT_04842at 282.026 kb on - strand, within H281DRAFT_04842at 282.034 kb on + strand, within H281DRAFT_04842at 282.135 kb on - strand, within H281DRAFT_04842at 282.333 kb on - strand, within H281DRAFT_04842at 282.334 kb on + strand, within H281DRAFT_04842at 282.334 kb on + strand, within H281DRAFT_04842at 282.334 kb on + strand, within H281DRAFT_04842at 282.334 kb on + strand, within H281DRAFT_04842at 282.335 kb on - strand, within H281DRAFT_04842at 282.335 kb on - strand, within H281DRAFT_04842at 282.335 kb on - strand, within H281DRAFT_04842at 282.335 kb on - strand, within H281DRAFT_04842at 282.335 kb on - strand, within H281DRAFT_04842at 282.384 kb on + strand, within H281DRAFT_04842at 282.385 kb on - strand, within H281DRAFT_04842at 282.478 kb on + strand, within H281DRAFT_04842at 282.485 kb on - strand, within H281DRAFT_04842at 282.566 kb on + strand, within H281DRAFT_04842at 282.622 kb on + strand, within H281DRAFT_04842at 282.623 kb on - strand, within H281DRAFT_04842at 282.623 kb on - strand, within H281DRAFT_04842at 282.655 kb on + strand, within H281DRAFT_04842at 282.655 kb on + strand, within H281DRAFT_04842at 282.655 kb on + strand, within H281DRAFT_04842at 282.656 kb on - strandat 282.725 kb on - strand, within H281DRAFT_04842at 282.725 kb on - strand, within H281DRAFT_04842at 282.730 kb on + strand, within H281DRAFT_04842at 282.731 kb on - strand, within H281DRAFT_04842at 282.731 kb on - strand, within H281DRAFT_04842at 282.731 kb on - strand, within H281DRAFT_04842at 282.754 kb on - strandat 282.945 kb on + strand, within H281DRAFT_04842at 282.945 kb on + strand, within H281DRAFT_04842at 282.946 kb on - strand, within H281DRAFT_04842at 283.235 kb on + strand, within H281DRAFT_04842at 283.236 kb on - strand, within H281DRAFT_04842at 283.354 kb on + strandat 283.354 kb on + strandat 283.444 kb on + strandat 283.520 kb on - strandat 283.531 kb on - strandat 283.531 kb on - strandat 283.531 kb on - strandat 283.570 kb on - strandat 283.570 kb on - strandat 283.601 kb on + strandat 283.601 kb on + strandat 283.601 kb on + strandat 283.602 kb on - strandat 283.611 kb on - strandat 283.710 kb on - strandat 283.710 kb on - strandat 283.756 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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279,953 - +0.6
279,956 + -0.3
279,956 + +1.2
279,956 + -0.7
279,957 - +0.2
280,058 + +0.8
280,058 + +0.2
280,105 + H281DRAFT_04841 0.10 +0.7
280,106 - H281DRAFT_04841 0.10 -0.6
280,199 + H281DRAFT_04841 0.20 +0.4
280,275 + H281DRAFT_04841 0.28 -0.5
280,275 + H281DRAFT_04841 0.28 -0.5
280,275 + H281DRAFT_04841 0.28 +0.5
280,276 - H281DRAFT_04841 0.28 +1.4
280,276 - H281DRAFT_04841 0.28 -0.4
280,276 - H281DRAFT_04841 0.28 +0.3
280,303 + H281DRAFT_04841 0.31 +0.9
280,303 + H281DRAFT_04841 0.31 -0.1
280,334 + H281DRAFT_04841 0.34 +0.4
280,334 + H281DRAFT_04841 0.34 +0.7
280,502 + H281DRAFT_04841 0.52 +0.4
280,503 - H281DRAFT_04841 0.52 -1.9
280,592 + H281DRAFT_04841 0.61 +1.8
280,593 - +2.4
280,622 + H281DRAFT_04841 0.65 -0.9
280,623 - H281DRAFT_04841 0.65 +0.1
280,623 - H281DRAFT_04841 0.65 -0.1
280,623 - H281DRAFT_04841 0.65 -0.3
280,688 + H281DRAFT_04841 0.72 +0.4
280,688 + H281DRAFT_04841 0.72 -2.1
280,688 + H281DRAFT_04841 0.72 +0.6
280,689 - H281DRAFT_04841 0.72 -2.0
280,689 - H281DRAFT_04841 0.72 -0.7
280,689 - H281DRAFT_04841 0.72 +0.1
280,689 - H281DRAFT_04841 0.72 +0.5
280,693 - H281DRAFT_04841 0.72 +0.5
280,693 - H281DRAFT_04841 0.72 +1.4
280,715 + H281DRAFT_04841 0.74 +0.1
280,715 + H281DRAFT_04841 0.74 -0.7
280,715 + H281DRAFT_04841 0.74 -0.2
280,716 - H281DRAFT_04841 0.75 +1.2
280,716 - H281DRAFT_04841 0.75 +0.2
280,716 - H281DRAFT_04841 0.75 +0.3
280,716 - H281DRAFT_04841 0.75 -2.2
280,716 - H281DRAFT_04841 0.75 -2.1
280,851 - H281DRAFT_04841 0.89 -0.4
280,851 - H281DRAFT_04841 0.89 -1.4
280,851 - H281DRAFT_04841 0.89 +0.1
280,884 + -0.4
280,885 - +0.1
280,885 - +0.2
280,920 - -0.9
280,920 - +0.6
280,934 - +0.4
280,934 - +0.8
280,986 + +0.9
281,009 + +0.4
281,009 + +0.3
281,009 + +1.5
281,009 + -0.7
281,009 + -0.7
281,010 - +0.3
281,060 - -0.9
281,067 + -0.9
281,117 + +1.3
281,117 + +0.1
281,117 + -1.1
281,117 + +0.3
281,117 + -0.9
281,117 + +0.1
281,117 + -1.7
281,118 - -0.9
281,147 + -0.5
281,212 + -0.1
281,213 - +0.8
281,275 + H281DRAFT_04842 0.12 -2.8
281,276 - H281DRAFT_04842 0.12 +0.1
281,276 - H281DRAFT_04842 0.12 +0.0
281,299 + H281DRAFT_04842 0.13 -1.3
281,299 + H281DRAFT_04842 0.13 +0.4
281,300 - H281DRAFT_04842 0.13 +0.3
281,300 - H281DRAFT_04842 0.13 -1.9
281,358 + H281DRAFT_04842 0.15 -0.1
281,358 + H281DRAFT_04842 0.15 -0.2
281,495 - H281DRAFT_04842 0.21 +1.3
281,545 + H281DRAFT_04842 0.23 -0.1
281,545 + H281DRAFT_04842 0.23 -1.1
281,546 - H281DRAFT_04842 0.23 -0.7
281,546 - H281DRAFT_04842 0.23 -0.1
281,546 - H281DRAFT_04842 0.23 +0.4
281,546 - H281DRAFT_04842 0.23 -0.4
281,630 + H281DRAFT_04842 0.26 +0.1
281,630 + H281DRAFT_04842 0.26 +0.6
281,630 + H281DRAFT_04842 0.26 -0.8
281,631 - H281DRAFT_04842 0.26 +0.9
281,631 - H281DRAFT_04842 0.26 -1.0
281,631 - H281DRAFT_04842 0.26 -1.3
281,642 + H281DRAFT_04842 0.26 +0.1
281,642 + H281DRAFT_04842 0.26 +0.2
281,642 + H281DRAFT_04842 0.26 -0.6
281,642 + H281DRAFT_04842 0.26 +0.5
281,643 - H281DRAFT_04842 0.26 -0.3
281,643 - H281DRAFT_04842 0.26 -1.0
281,650 + H281DRAFT_04842 0.27 -0.6
281,651 - H281DRAFT_04842 0.27 -0.5
281,651 - H281DRAFT_04842 0.27 -1.0
281,651 - H281DRAFT_04842 0.27 -1.2
281,679 + H281DRAFT_04842 0.28 +0.5
281,679 + H281DRAFT_04842 0.28 +0.4
281,679 + H281DRAFT_04842 0.28 -0.5
281,700 + H281DRAFT_04842 0.28 -0.1
281,778 - H281DRAFT_04842 0.31 -1.1
281,827 + H281DRAFT_04842 0.33 -0.0
281,828 - H281DRAFT_04842 0.33 -0.5
281,848 + H281DRAFT_04842 0.34 +0.1
281,848 + H281DRAFT_04842 0.34 -0.4
281,849 - H281DRAFT_04842 0.34 +0.3
281,849 - H281DRAFT_04842 0.34 -0.8
281,849 - H281DRAFT_04842 0.34 -0.6
281,911 + H281DRAFT_04842 0.36 +1.4
281,941 + H281DRAFT_04842 0.38 -0.6
281,942 - H281DRAFT_04842 0.38 -0.7
281,942 - H281DRAFT_04842 0.38 -1.1
281,995 + H281DRAFT_04842 0.40 +0.1
281,995 + H281DRAFT_04842 0.40 -0.6
281,995 + H281DRAFT_04842 0.40 +1.3
281,996 - H281DRAFT_04842 0.40 -1.0
281,996 - H281DRAFT_04842 0.40 -0.3
282,026 - H281DRAFT_04842 0.41 +0.3
282,026 - H281DRAFT_04842 0.41 -0.5
282,034 + H281DRAFT_04842 0.41 -0.5
282,135 - H281DRAFT_04842 0.45 -0.2
282,333 - H281DRAFT_04842 0.53 -0.6
282,334 + H281DRAFT_04842 0.53 -0.7
282,334 + H281DRAFT_04842 0.53 +1.1
282,334 + H281DRAFT_04842 0.53 +2.9
282,334 + H281DRAFT_04842 0.53 +1.0
282,335 - H281DRAFT_04842 0.53 +0.1
282,335 - H281DRAFT_04842 0.53 -0.1
282,335 - H281DRAFT_04842 0.53 -1.3
282,335 - H281DRAFT_04842 0.53 -0.4
282,335 - H281DRAFT_04842 0.53 -1.3
282,384 + H281DRAFT_04842 0.55 +0.0
282,385 - H281DRAFT_04842 0.55 -0.3
282,478 + H281DRAFT_04842 0.58 -0.4
282,485 - H281DRAFT_04842 0.58 -0.7
282,566 + H281DRAFT_04842 0.61 -0.5
282,622 + H281DRAFT_04842 0.64 -0.8
282,623 - H281DRAFT_04842 0.64 +0.0
282,623 - H281DRAFT_04842 0.64 +1.3
282,655 + H281DRAFT_04842 0.65 -0.5
282,655 + H281DRAFT_04842 0.65 -0.0
282,655 + H281DRAFT_04842 0.65 -0.5
282,656 - +2.1
282,725 - H281DRAFT_04842 0.68 -1.3
282,725 - H281DRAFT_04842 0.68 -0.6
282,730 + H281DRAFT_04842 0.68 -0.5
282,731 - H281DRAFT_04842 0.68 -0.3
282,731 - H281DRAFT_04842 0.68 -0.2
282,731 - H281DRAFT_04842 0.68 -0.5
282,754 - +3.1
282,945 + H281DRAFT_04842 0.76 -0.5
282,945 + H281DRAFT_04842 0.76 -0.5
282,946 - H281DRAFT_04842 0.76 +0.1
283,235 + H281DRAFT_04842 0.87 -0.6
283,236 - H281DRAFT_04842 0.87 -0.3
283,354 + +0.0
283,354 + -1.0
283,444 + -0.4
283,520 - +0.6
283,531 - -0.9
283,531 - -0.7
283,531 - -0.6
283,570 - -1.7
283,570 - -1.3
283,601 + -0.6
283,601 + -0.4
283,601 + -0.1
283,602 - -1.0
283,611 - +0.2
283,710 - -0.0
283,710 - +0.4
283,756 - -0.1

Or see this region's nucleotide sequence