Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04796

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04795 and H281DRAFT_04796 are separated by 10 nucleotidesH281DRAFT_04796 and H281DRAFT_04797 are separated by 88 nucleotides H281DRAFT_04795: H281DRAFT_04795 - hypothetical protein, at 223,077 to 224,231 _04795 H281DRAFT_04796: H281DRAFT_04796 - Polysaccharide biosynthesis protein, at 224,242 to 225,486 _04796 H281DRAFT_04797: H281DRAFT_04797 - tyrosine-protein kinase Etk/Wzc, at 225,575 to 227,827 _04797 Position (kb) 224 225 226Strain fitness (log2 ratio) -2 -1 0 1at 223.461 kb on - strand, within H281DRAFT_04795at 223.490 kb on + strand, within H281DRAFT_04795at 223.491 kb on - strand, within H281DRAFT_04795at 223.897 kb on + strand, within H281DRAFT_04795at 223.898 kb on - strand, within H281DRAFT_04795at 223.988 kb on + strand, within H281DRAFT_04795at 224.304 kb on - strandat 224.304 kb on - strandat 224.307 kb on - strandat 224.529 kb on - strand, within H281DRAFT_04796at 224.594 kb on + strand, within H281DRAFT_04796at 224.948 kb on + strand, within H281DRAFT_04796at 224.949 kb on - strand, within H281DRAFT_04796at 224.949 kb on - strand, within H281DRAFT_04796at 225.176 kb on - strand, within H281DRAFT_04796at 225.185 kb on + strand, within H281DRAFT_04796at 225.407 kb on - strandat 225.543 kb on + strandat 225.543 kb on + strandat 225.544 kb on - strandat 225.544 kb on - strandat 226.094 kb on + strand, within H281DRAFT_04797at 226.421 kb on + strand, within H281DRAFT_04797at 226.421 kb on + strand, within H281DRAFT_04797at 226.422 kb on - strand, within H281DRAFT_04797

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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223,461 - H281DRAFT_04795 0.33 +1.0
223,490 + H281DRAFT_04795 0.36 +0.7
223,491 - H281DRAFT_04795 0.36 +0.2
223,897 + H281DRAFT_04795 0.71 -0.2
223,898 - H281DRAFT_04795 0.71 +0.6
223,988 + H281DRAFT_04795 0.79 -0.0
224,304 - -0.0
224,304 - -0.8
224,307 - -0.4
224,529 - H281DRAFT_04796 0.23 -0.5
224,594 + H281DRAFT_04796 0.28 +0.3
224,948 + H281DRAFT_04796 0.57 +0.0
224,949 - H281DRAFT_04796 0.57 +0.8
224,949 - H281DRAFT_04796 0.57 -2.1
225,176 - H281DRAFT_04796 0.75 +1.1
225,185 + H281DRAFT_04796 0.76 -0.2
225,407 - +0.2
225,543 + -0.7
225,543 + -0.5
225,544 - +0.1
225,544 - -0.5
226,094 + H281DRAFT_04797 0.23 -0.1
226,421 + H281DRAFT_04797 0.38 +0.6
226,421 + H281DRAFT_04797 0.38 -0.9
226,422 - H281DRAFT_04797 0.38 +0.7

Or see this region's nucleotide sequence