Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04706

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04704 and H281DRAFT_04705 overlap by 4 nucleotidesH281DRAFT_04705 and H281DRAFT_04706 are separated by 48 nucleotidesH281DRAFT_04706 and H281DRAFT_04707 overlap by 4 nucleotidesH281DRAFT_04707 and H281DRAFT_04708 overlap by 8 nucleotides H281DRAFT_04704: H281DRAFT_04704 - Deoxyadenosine/deoxycytidine kinase, at 117,480 to 118,160 _04704 H281DRAFT_04705: H281DRAFT_04705 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 118,157 to 118,690 _04705 H281DRAFT_04706: H281DRAFT_04706 - poly(A) polymerase, at 118,739 to 120,337 _04706 H281DRAFT_04707: H281DRAFT_04707 - HAD-superfamily subfamily IB hydrolase, TIGR01490, at 120,334 to 121,020 _04707 H281DRAFT_04708: H281DRAFT_04708 - regulatory inactivation of DnaA Hda protein, at 121,013 to 121,756 _04708 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 117.965 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.086 kb on - strand, within H281DRAFT_04704at 118.696 kb on - strandat 118.696 kb on - strandat 118.696 kb on - strandat 118.696 kb on - strandat 118.710 kb on - strandat 118.889 kb on - strandat 119.006 kb on - strand, within H281DRAFT_04706at 119.179 kb on - strand, within H281DRAFT_04706at 119.624 kb on + strand, within H281DRAFT_04706at 119.625 kb on - strand, within H281DRAFT_04706at 119.625 kb on - strand, within H281DRAFT_04706at 119.647 kb on - strand, within H281DRAFT_04706at 119.676 kb on + strand, within H281DRAFT_04706at 119.676 kb on + strand, within H281DRAFT_04706at 119.676 kb on + strand, within H281DRAFT_04706at 119.677 kb on - strand, within H281DRAFT_04706at 119.677 kb on - strand, within H281DRAFT_04706at 119.679 kb on + strand, within H281DRAFT_04706at 119.680 kb on - strand, within H281DRAFT_04706at 119.680 kb on - strand, within H281DRAFT_04706at 119.751 kb on - strand, within H281DRAFT_04706at 119.975 kb on + strand, within H281DRAFT_04706at 119.976 kb on - strand, within H281DRAFT_04706at 120.035 kb on - strand, within H281DRAFT_04706at 120.035 kb on - strand, within H281DRAFT_04706at 120.116 kb on + strand, within H281DRAFT_04706at 120.116 kb on + strand, within H281DRAFT_04706at 120.312 kb on - strandat 120.317 kb on - strandat 120.473 kb on + strand, within H281DRAFT_04707at 120.551 kb on + strand, within H281DRAFT_04707at 120.779 kb on + strand, within H281DRAFT_04707at 120.779 kb on + strand, within H281DRAFT_04707at 120.780 kb on - strand, within H281DRAFT_04707at 120.780 kb on - strand, within H281DRAFT_04707at 120.848 kb on + strand, within H281DRAFT_04707at 120.879 kb on - strand, within H281DRAFT_04707at 120.887 kb on + strand, within H281DRAFT_04707at 120.887 kb on + strand, within H281DRAFT_04707at 120.887 kb on + strandat 120.930 kb on + strand, within H281DRAFT_04707at 121.029 kb on - strandat 121.029 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
remove
117,965 - H281DRAFT_04704 0.71 -0.1
118,086 - H281DRAFT_04704 0.89 +2.8
118,086 - H281DRAFT_04704 0.89 -0.9
118,086 - H281DRAFT_04704 0.89 +1.5
118,696 - -0.2
118,696 - -0.2
118,696 - -1.5
118,696 - -0.5
118,710 - +0.4
118,889 - +0.2
119,006 - H281DRAFT_04706 0.17 +0.7
119,179 - H281DRAFT_04706 0.28 +0.9
119,624 + H281DRAFT_04706 0.55 -0.5
119,625 - H281DRAFT_04706 0.55 -0.2
119,625 - H281DRAFT_04706 0.55 +0.3
119,647 - H281DRAFT_04706 0.57 +0.5
119,676 + H281DRAFT_04706 0.59 +0.1
119,676 + H281DRAFT_04706 0.59 +1.4
119,676 + H281DRAFT_04706 0.59 -0.5
119,677 - H281DRAFT_04706 0.59 +0.8
119,677 - H281DRAFT_04706 0.59 +2.0
119,679 + H281DRAFT_04706 0.59 +0.1
119,680 - H281DRAFT_04706 0.59 +0.5
119,680 - H281DRAFT_04706 0.59 -0.4
119,751 - H281DRAFT_04706 0.63 +0.6
119,975 + H281DRAFT_04706 0.77 +1.2
119,976 - H281DRAFT_04706 0.77 +1.2
120,035 - H281DRAFT_04706 0.81 +1.0
120,035 - H281DRAFT_04706 0.81 +0.5
120,116 + H281DRAFT_04706 0.86 +0.8
120,116 + H281DRAFT_04706 0.86 +1.0
120,312 - +0.5
120,317 - -0.6
120,473 + H281DRAFT_04707 0.20 -4.1
120,551 + H281DRAFT_04707 0.32 -1.9
120,779 + H281DRAFT_04707 0.65 -1.2
120,779 + H281DRAFT_04707 0.65 -1.5
120,780 - H281DRAFT_04707 0.65 -2.5
120,780 - H281DRAFT_04707 0.65 -3.4
120,848 + H281DRAFT_04707 0.75 -3.2
120,879 - H281DRAFT_04707 0.79 -1.0
120,887 + H281DRAFT_04707 0.80 -1.7
120,887 + H281DRAFT_04707 0.80 -2.0
120,887 + +1.1
120,930 + H281DRAFT_04707 0.87 -1.1
121,029 - +0.0
121,029 - -0.5

Or see this region's nucleotide sequence