Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04224

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04222 and H281DRAFT_04223 are separated by 224 nucleotidesH281DRAFT_04223 and H281DRAFT_04224 are separated by 109 nucleotidesH281DRAFT_04224 and H281DRAFT_04225 are separated by 595 nucleotides H281DRAFT_04222: H281DRAFT_04222 - ATP-dependent RNA helicase RhlE, at 341,221 to 342,753 _04222 H281DRAFT_04223: H281DRAFT_04223 - hypothetical protein, at 342,978 to 343,499 _04223 H281DRAFT_04224: H281DRAFT_04224 - Fatty acid desaturase, at 343,609 to 344,436 _04224 H281DRAFT_04225: H281DRAFT_04225 - transcriptional regulator, DeoR family, at 345,032 to 345,811 _04225 Position (kb) 343 344 345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 342.815 kb on - strandat 342.864 kb on + strandat 342.864 kb on + strandat 342.864 kb on + strandat 342.865 kb on - strandat 342.865 kb on - strandat 342.899 kb on + strandat 342.900 kb on - strandat 342.901 kb on + strandat 342.902 kb on - strandat 343.070 kb on + strand, within H281DRAFT_04223at 343.070 kb on + strand, within H281DRAFT_04223at 343.071 kb on - strand, within H281DRAFT_04223at 343.071 kb on - strand, within H281DRAFT_04223at 343.071 kb on - strand, within H281DRAFT_04223at 343.136 kb on + strand, within H281DRAFT_04223at 343.137 kb on - strand, within H281DRAFT_04223at 343.137 kb on - strand, within H281DRAFT_04223at 343.138 kb on + strand, within H281DRAFT_04223at 343.138 kb on + strand, within H281DRAFT_04223at 343.138 kb on + strand, within H281DRAFT_04223at 343.139 kb on - strand, within H281DRAFT_04223at 343.139 kb on - strand, within H281DRAFT_04223at 343.202 kb on - strand, within H281DRAFT_04223at 343.315 kb on + strand, within H281DRAFT_04223at 343.315 kb on + strand, within H281DRAFT_04223at 343.315 kb on + strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.316 kb on - strand, within H281DRAFT_04223at 343.576 kb on - strandat 343.576 kb on - strandat 343.649 kb on + strandat 343.650 kb on - strandat 343.728 kb on + strand, within H281DRAFT_04224at 343.772 kb on + strand, within H281DRAFT_04224at 343.773 kb on - strand, within H281DRAFT_04224at 343.858 kb on + strandat 343.859 kb on - strand, within H281DRAFT_04224at 343.916 kb on + strand, within H281DRAFT_04224at 343.916 kb on + strand, within H281DRAFT_04224at 343.917 kb on - strand, within H281DRAFT_04224at 343.917 kb on - strand, within H281DRAFT_04224at 343.917 kb on - strand, within H281DRAFT_04224at 343.928 kb on + strand, within H281DRAFT_04224at 343.946 kb on + strand, within H281DRAFT_04224at 343.947 kb on - strand, within H281DRAFT_04224at 343.947 kb on - strand, within H281DRAFT_04224at 344.027 kb on + strand, within H281DRAFT_04224at 344.120 kb on + strand, within H281DRAFT_04224at 344.121 kb on - strand, within H281DRAFT_04224at 344.136 kb on + strand, within H281DRAFT_04224at 344.160 kb on - strand, within H281DRAFT_04224at 344.175 kb on - strand, within H281DRAFT_04224at 344.183 kb on + strand, within H281DRAFT_04224at 344.183 kb on + strand, within H281DRAFT_04224at 344.184 kb on - strand, within H281DRAFT_04224at 344.284 kb on - strand, within H281DRAFT_04224at 344.291 kb on + strand, within H281DRAFT_04224at 344.291 kb on + strand, within H281DRAFT_04224at 344.292 kb on - strand, within H281DRAFT_04224at 344.338 kb on + strand, within H281DRAFT_04224at 344.339 kb on - strand, within H281DRAFT_04224at 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.389 kb on + strandat 344.390 kb on - strandat 344.390 kb on - strandat 344.491 kb on + strandat 344.491 kb on + strandat 344.492 kb on - strandat 344.543 kb on + strandat 344.550 kb on - strandat 344.570 kb on + strandat 344.570 kb on + strandat 344.613 kb on + strandat 344.643 kb on + strandat 344.781 kb on - strandat 344.781 kb on - strandat 344.781 kb on - strandat 344.911 kb on + strandat 344.911 kb on + strandat 344.911 kb on + strandat 344.912 kb on - strandat 344.912 kb on - strandat 344.954 kb on + strandat 344.954 kb on + strandat 344.954 kb on + strandat 344.955 kb on - strandat 344.959 kb on + strandat 344.960 kb on - strandat 344.960 kb on - strandat 344.960 kb on - strandat 344.975 kb on + strandat 344.976 kb on - strandat 344.976 kb on - strandat 345.248 kb on + strand, within H281DRAFT_04225at 345.248 kb on + strand, within H281DRAFT_04225at 345.249 kb on - strand, within H281DRAFT_04225at 345.301 kb on - strand, within H281DRAFT_04225at 345.406 kb on + strand, within H281DRAFT_04225at 345.406 kb on + strand, within H281DRAFT_04225

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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342,815 - +0.4
342,864 + +0.7
342,864 + +1.3
342,864 + -0.4
342,865 - +0.3
342,865 - -0.6
342,899 + +0.0
342,900 - +0.4
342,901 + -0.5
342,902 - -0.8
343,070 + H281DRAFT_04223 0.18 +2.0
343,070 + H281DRAFT_04223 0.18 -1.1
343,071 - H281DRAFT_04223 0.18 +1.7
343,071 - H281DRAFT_04223 0.18 +0.1
343,071 - H281DRAFT_04223 0.18 +0.5
343,136 + H281DRAFT_04223 0.30 -0.6
343,137 - H281DRAFT_04223 0.30 -0.0
343,137 - H281DRAFT_04223 0.30 -0.4
343,138 + H281DRAFT_04223 0.31 -0.1
343,138 + H281DRAFT_04223 0.31 -1.7
343,138 + H281DRAFT_04223 0.31 +0.2
343,139 - H281DRAFT_04223 0.31 -0.2
343,139 - H281DRAFT_04223 0.31 -1.2
343,202 - H281DRAFT_04223 0.43 +0.5
343,315 + H281DRAFT_04223 0.65 -0.1
343,315 + H281DRAFT_04223 0.65 +0.1
343,315 + H281DRAFT_04223 0.65 -0.0
343,316 - H281DRAFT_04223 0.65 -2.0
343,316 - H281DRAFT_04223 0.65 +0.5
343,316 - H281DRAFT_04223 0.65 -0.4
343,316 - H281DRAFT_04223 0.65 +0.4
343,576 - -0.1
343,576 - -1.2
343,649 + +0.7
343,650 - +1.1
343,728 + H281DRAFT_04224 0.14 +0.8
343,772 + H281DRAFT_04224 0.20 +0.1
343,773 - H281DRAFT_04224 0.20 +1.3
343,858 + +3.1
343,859 - H281DRAFT_04224 0.30 +0.1
343,916 + H281DRAFT_04224 0.37 +0.4
343,916 + H281DRAFT_04224 0.37 -0.3
343,917 - H281DRAFT_04224 0.37 +0.1
343,917 - H281DRAFT_04224 0.37 -0.1
343,917 - H281DRAFT_04224 0.37 +0.2
343,928 + H281DRAFT_04224 0.39 +1.6
343,946 + H281DRAFT_04224 0.41 +0.2
343,947 - H281DRAFT_04224 0.41 +1.1
343,947 - H281DRAFT_04224 0.41 +0.5
344,027 + H281DRAFT_04224 0.50 -0.7
344,120 + H281DRAFT_04224 0.62 -0.9
344,121 - H281DRAFT_04224 0.62 -0.6
344,136 + H281DRAFT_04224 0.64 +2.4
344,160 - H281DRAFT_04224 0.67 -0.1
344,175 - H281DRAFT_04224 0.68 +0.2
344,183 + H281DRAFT_04224 0.69 +0.8
344,183 + H281DRAFT_04224 0.69 +0.9
344,184 - H281DRAFT_04224 0.69 +0.6
344,284 - H281DRAFT_04224 0.82 +0.1
344,291 + H281DRAFT_04224 0.82 +1.0
344,291 + H281DRAFT_04224 0.82 +0.5
344,292 - H281DRAFT_04224 0.82 +0.7
344,338 + H281DRAFT_04224 0.88 -1.7
344,339 - H281DRAFT_04224 0.88 +0.1
344,389 + +1.4
344,389 + +1.4
344,389 + +1.1
344,389 + +0.4
344,389 + +0.1
344,389 + +0.6
344,389 + +0.0
344,389 + +0.6
344,390 - +0.2
344,390 - +0.3
344,491 + +0.9
344,491 + +0.5
344,492 - +0.2
344,543 + +1.3
344,550 - -0.9
344,570 + -0.1
344,570 + +0.1
344,613 + +0.7
344,643 + -0.4
344,781 - -0.1
344,781 - +0.8
344,781 - -1.3
344,911 + -0.8
344,911 + -0.5
344,911 + -0.6
344,912 - +1.1
344,912 - -0.0
344,954 + +0.3
344,954 + +1.1
344,954 + +0.4
344,955 - +1.1
344,959 + +0.7
344,960 - -1.7
344,960 - -3.0
344,960 - -2.3
344,975 + +0.3
344,976 - -1.7
344,976 - -1.7
345,248 + H281DRAFT_04225 0.28 -1.1
345,248 + H281DRAFT_04225 0.28 -1.0
345,249 - H281DRAFT_04225 0.28 -1.4
345,301 - H281DRAFT_04225 0.34 -1.5
345,406 + H281DRAFT_04225 0.48 -0.5
345,406 + H281DRAFT_04225 0.48 -0.8

Or see this region's nucleotide sequence