Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04114 and H281DRAFT_04115 are separated by 114 nucleotides H281DRAFT_04115 and H281DRAFT_04116 are separated by 5 nucleotides H281DRAFT_04116 and H281DRAFT_04117 are separated by 504 nucleotides H281DRAFT_04117 and H281DRAFT_04118 are separated by 183 nucleotides
H281DRAFT_04114: H281DRAFT_04114 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 224,779 to 225,537
_04114
H281DRAFT_04115: H281DRAFT_04115 - Regulator of sirC expression, contains transglutaminase-like and TPR domains, at 225,652 to 226,494
_04115
H281DRAFT_04116: H281DRAFT_04116 - putative peptidoglycan lipid II flippase, at 226,500 to 228,050
_04116
H281DRAFT_04117: H281DRAFT_04117 - SSU ribosomal protein S20P, at 228,555 to 228,833
_04117
H281DRAFT_04118: H281DRAFT_04118 - Protein of unknown function (DUF3579), at 229,017 to 229,364
_04118
Position (kb) 226
227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 225.535 kb on + strand at 225.536 kb on - strand at 225.536 kb on - strand at 225.610 kb on - strand at 225.653 kb on + strand at 225.654 kb on - strand at 225.666 kb on + strand at 225.666 kb on + strand at 225.779 kb on + strand, within H281DRAFT_04115 at 225.841 kb on + strand, within H281DRAFT_04115 at 225.841 kb on + strand, within H281DRAFT_04115 at 225.842 kb on - strand, within H281DRAFT_04115 at 225.842 kb on - strand, within H281DRAFT_04115 at 225.842 kb on - strand, within H281DRAFT_04115 at 225.843 kb on + strand at 225.843 kb on + strand, within H281DRAFT_04115 at 225.843 kb on + strand, within H281DRAFT_04115 at 225.844 kb on - strand, within H281DRAFT_04115 at 225.896 kb on + strand, within H281DRAFT_04115 at 225.896 kb on + strand, within H281DRAFT_04115 at 225.921 kb on + strand, within H281DRAFT_04115 at 225.921 kb on + strand, within H281DRAFT_04115 at 225.922 kb on - strand, within H281DRAFT_04115 at 226.163 kb on + strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.239 kb on - strand, within H281DRAFT_04115 at 226.241 kb on + strand, within H281DRAFT_04115 at 226.241 kb on + strand, within H281DRAFT_04115 at 226.475 kb on + strand at 226.523 kb on - strand at 226.528 kb on + strand at 226.528 kb on + strand at 228.060 kb on - strand at 228.060 kb on - strand at 228.060 kb on - strand at 228.063 kb on - strand at 228.063 kb on - strand at 228.063 kb on - strand at 228.063 kb on - strand at 228.064 kb on + strand at 228.064 kb on + strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.065 kb on - strand at 228.859 kb on + strand at 228.860 kb on - strand at 228.924 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 225,535 + +0.3 225,536 - +0.3 225,536 - -1.0 225,610 - +0.2 225,653 + +0.1 225,654 - +0.2 225,666 + +1.5 225,666 + -0.8 225,779 + H281DRAFT_04115 0.15 -0.9 225,841 + H281DRAFT_04115 0.22 +0.9 225,841 + H281DRAFT_04115 0.22 +0.5 225,842 - H281DRAFT_04115 0.23 +0.4 225,842 - H281DRAFT_04115 0.23 -1.8 225,842 - H281DRAFT_04115 0.23 +0.5 225,843 + -0.9 225,843 + H281DRAFT_04115 0.23 +0.2 225,843 + H281DRAFT_04115 0.23 -0.4 225,844 - H281DRAFT_04115 0.23 +0.7 225,896 + H281DRAFT_04115 0.29 -0.1 225,896 + H281DRAFT_04115 0.29 -0.6 225,921 + H281DRAFT_04115 0.32 +2.3 225,921 + H281DRAFT_04115 0.32 -0.5 225,922 - H281DRAFT_04115 0.32 +0.8 226,163 + H281DRAFT_04115 0.61 +1.2 226,239 - H281DRAFT_04115 0.70 -0.3 226,239 - H281DRAFT_04115 0.70 +0.8 226,239 - H281DRAFT_04115 0.70 +0.4 226,239 - H281DRAFT_04115 0.70 -0.8 226,239 - H281DRAFT_04115 0.70 +0.3 226,241 + H281DRAFT_04115 0.70 +1.0 226,241 + H281DRAFT_04115 0.70 +0.0 226,475 + +0.4 226,523 - +0.8 226,528 + -0.5 226,528 + +0.8 228,060 - -0.7 228,060 - +0.4 228,060 - -0.2 228,063 - -1.7 228,063 - -0.9 228,063 - +0.2 228,063 - +0.6 228,064 + -0.9 228,064 + +0.1 228,065 - +0.2 228,065 - -3.0 228,065 - -0.3 228,065 - -1.2 228,065 - -0.8 228,859 + -1.2 228,860 - +1.1 228,924 + -0.5
Or see this region's nucleotide sequence