Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04103 and H281DRAFT_04104 overlap by 45 nucleotides H281DRAFT_04104 and H281DRAFT_04105 are separated by 203 nucleotides H281DRAFT_04105 and H281DRAFT_04106 are separated by 108 nucleotides
H281DRAFT_04103: H281DRAFT_04103 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 212,840 to 214,117
_04103
H281DRAFT_04104: H281DRAFT_04104 - RNA polymerase sigma-70 factor, ECF subfamily, at 214,073 to 215,260
_04104
H281DRAFT_04105: H281DRAFT_04105 - ATP-dependent Clp protease proteolytic subunit ClpP, at 215,464 to 216,123
_04105
H281DRAFT_04106: H281DRAFT_04106 - Uncharacterized conserved protein, LabA/DUF88 family, at 216,232 to 217,725
_04106
Position (kb) 214
215
216 Strain fitness (log2 ratio) -1
0
1
2 at 213.165 kb on + strand, within H281DRAFT_04103 at 213.201 kb on - strand, within H281DRAFT_04103 at 213.256 kb on - strand, within H281DRAFT_04103 at 213.342 kb on + strand, within H281DRAFT_04103 at 213.533 kb on - strand, within H281DRAFT_04103 at 213.720 kb on - strand, within H281DRAFT_04103 at 213.947 kb on + strand, within H281DRAFT_04103 at 213.947 kb on + strand, within H281DRAFT_04103 at 213.987 kb on + strand, within H281DRAFT_04103 at 213.987 kb on + strand, within H281DRAFT_04103 at 213.988 kb on - strand, within H281DRAFT_04103 at 213.988 kb on - strand, within H281DRAFT_04103 at 213.988 kb on - strand, within H281DRAFT_04103 at 214.052 kb on - strand at 214.074 kb on + strand at 214.081 kb on - strand at 214.081 kb on - strand at 214.309 kb on - strand, within H281DRAFT_04104 at 214.532 kb on + strand, within H281DRAFT_04104 at 214.823 kb on - strand, within H281DRAFT_04104 at 214.823 kb on - strand, within H281DRAFT_04104 at 214.875 kb on - strand, within H281DRAFT_04104 at 214.932 kb on + strand, within H281DRAFT_04104 at 214.933 kb on - strand, within H281DRAFT_04104 at 214.933 kb on - strand, within H281DRAFT_04104 at 215.305 kb on + strand at 215.305 kb on + strand at 215.371 kb on - strand at 215.403 kb on - strand at 215.476 kb on + strand at 215.516 kb on + strand at 215.517 kb on - strand at 215.546 kb on - strand at 215.554 kb on + strand, within H281DRAFT_04105 at 215.554 kb on + strand, within H281DRAFT_04105 at 215.554 kb on + strand, within H281DRAFT_04105 at 215.555 kb on - strand, within H281DRAFT_04105 at 215.670 kb on + strand, within H281DRAFT_04105 at 215.671 kb on - strand, within H281DRAFT_04105 at 215.671 kb on - strand, within H281DRAFT_04105 at 215.681 kb on - strand, within H281DRAFT_04105 at 215.681 kb on - strand, within H281DRAFT_04105 at 215.707 kb on + strand, within H281DRAFT_04105 at 215.726 kb on - strand, within H281DRAFT_04105 at 215.765 kb on + strand, within H281DRAFT_04105 at 215.766 kb on - strand, within H281DRAFT_04105 at 215.898 kb on + strand, within H281DRAFT_04105 at 215.898 kb on + strand, within H281DRAFT_04105 at 215.898 kb on + strand, within H281DRAFT_04105 at 215.898 kb on + strand, within H281DRAFT_04105 at 215.899 kb on - strand, within H281DRAFT_04105 at 215.900 kb on + strand, within H281DRAFT_04105 at 215.900 kb on + strand, within H281DRAFT_04105 at 215.901 kb on - strand, within H281DRAFT_04105 at 215.927 kb on - strand, within H281DRAFT_04105 at 216.041 kb on - strand, within H281DRAFT_04105 at 216.059 kb on + strand at 216.121 kb on + strand at 216.121 kb on + strand at 216.121 kb on + strand at 216.121 kb on + strand at 216.122 kb on - strand at 216.122 kb on - strand at 216.182 kb on - strand at 216.230 kb on - strand at 216.230 kb on - strand at 216.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 213,165 + H281DRAFT_04103 0.25 +1.1 213,201 - H281DRAFT_04103 0.28 +2.7 213,256 - H281DRAFT_04103 0.33 -0.9 213,342 + H281DRAFT_04103 0.39 +0.2 213,533 - H281DRAFT_04103 0.54 +0.2 213,720 - H281DRAFT_04103 0.69 +1.4 213,947 + H281DRAFT_04103 0.87 -0.3 213,947 + H281DRAFT_04103 0.87 +0.2 213,987 + H281DRAFT_04103 0.90 -0.2 213,987 + H281DRAFT_04103 0.90 +0.6 213,988 - H281DRAFT_04103 0.90 +0.3 213,988 - H281DRAFT_04103 0.90 -0.0 213,988 - H281DRAFT_04103 0.90 -0.0 214,052 - -1.2 214,074 + -1.6 214,081 - -0.2 214,081 - -1.4 214,309 - H281DRAFT_04104 0.20 -1.4 214,532 + H281DRAFT_04104 0.39 -1.1 214,823 - H281DRAFT_04104 0.63 -0.3 214,823 - H281DRAFT_04104 0.63 +0.9 214,875 - H281DRAFT_04104 0.68 +0.8 214,932 + H281DRAFT_04104 0.72 -0.9 214,933 - H281DRAFT_04104 0.72 -0.0 214,933 - H281DRAFT_04104 0.72 +0.5 215,305 + +0.7 215,305 + -0.1 215,371 - +0.1 215,403 - +0.2 215,476 + +0.2 215,516 + -0.7 215,517 - +0.3 215,546 - +0.4 215,554 + H281DRAFT_04105 0.14 +2.3 215,554 + H281DRAFT_04105 0.14 -0.1 215,554 + H281DRAFT_04105 0.14 -0.8 215,555 - H281DRAFT_04105 0.14 +0.3 215,670 + H281DRAFT_04105 0.31 +0.5 215,671 - H281DRAFT_04105 0.31 +0.3 215,671 - H281DRAFT_04105 0.31 +0.2 215,681 - H281DRAFT_04105 0.33 -0.4 215,681 - H281DRAFT_04105 0.33 -0.5 215,707 + H281DRAFT_04105 0.37 -0.3 215,726 - H281DRAFT_04105 0.40 -1.1 215,765 + H281DRAFT_04105 0.46 -1.2 215,766 - H281DRAFT_04105 0.46 -0.2 215,898 + H281DRAFT_04105 0.66 +0.2 215,898 + H281DRAFT_04105 0.66 +0.8 215,898 + H281DRAFT_04105 0.66 +0.0 215,898 + H281DRAFT_04105 0.66 +1.6 215,899 - H281DRAFT_04105 0.66 +0.3 215,900 + H281DRAFT_04105 0.66 -1.6 215,900 + H281DRAFT_04105 0.66 +1.1 215,901 - H281DRAFT_04105 0.66 +0.3 215,927 - H281DRAFT_04105 0.70 +0.1 216,041 - H281DRAFT_04105 0.87 +1.9 216,059 + -1.5 216,121 + -0.3 216,121 + +0.4 216,121 + -0.6 216,121 + +0.9 216,122 - -0.5 216,122 - +0.2 216,182 - -0.2 216,230 - +0.7 216,230 - +0.2 216,230 - +0.5
Or see this region's nucleotide sequence