Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04001

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03999 and H281DRAFT_04000 are separated by 99 nucleotidesH281DRAFT_04000 and H281DRAFT_04001 are separated by 69 nucleotidesH281DRAFT_04001 and H281DRAFT_04002 are separated by 79 nucleotidesH281DRAFT_04002 and H281DRAFT_04003 are separated by 96 nucleotidesH281DRAFT_04003 and H281DRAFT_04004 are separated by 95 nucleotides H281DRAFT_03999: H281DRAFT_03999 - porin, GBP family, at 103,852 to 104,997 _03999 H281DRAFT_04000: H281DRAFT_04000 - transcription elongation factor GreB, at 105,097 to 105,717 _04000 H281DRAFT_04001: H281DRAFT_04001 - tRNA_Arg_ACG, at 105,787 to 105,863 _04001 H281DRAFT_04002: H281DRAFT_04002 - tRNA_Arg_ACG, at 105,943 to 106,019 _04002 H281DRAFT_04003: H281DRAFT_04003 - Protein of unknown function (DUF2591), at 106,116 to 106,607 _04003 H281DRAFT_04004: H281DRAFT_04004 - (p)ppGpp synthetase I, SpoT/RelA, at 106,703 to 109,063 _04004 Position (kb) 105 106Strain fitness (log2 ratio) -1 0 1 2at 104.872 kb on + strand, within H281DRAFT_03999at 104.887 kb on + strandat 104.995 kb on + strandat 104.996 kb on - strandat 105.098 kb on + strandat 105.098 kb on + strandat 105.098 kb on + strandat 105.098 kb on + strandat 105.098 kb on + strandat 105.099 kb on - strandat 105.099 kb on - strandat 105.099 kb on - strandat 105.099 kb on - strandat 105.122 kb on + strandat 105.123 kb on - strandat 105.167 kb on + strand, within H281DRAFT_04000at 105.167 kb on + strand, within H281DRAFT_04000at 105.168 kb on - strand, within H281DRAFT_04000at 105.168 kb on - strand, within H281DRAFT_04000at 105.168 kb on - strand, within H281DRAFT_04000at 105.415 kb on + strand, within H281DRAFT_04000at 105.415 kb on + strand, within H281DRAFT_04000at 105.415 kb on + strand, within H281DRAFT_04000at 105.415 kb on + strand, within H281DRAFT_04000at 105.416 kb on - strand, within H281DRAFT_04000at 105.416 kb on - strand, within H281DRAFT_04000at 105.440 kb on + strand, within H281DRAFT_04000at 105.446 kb on + strand, within H281DRAFT_04000at 105.446 kb on + strand, within H281DRAFT_04000at 105.446 kb on + strand, within H281DRAFT_04000at 105.447 kb on - strand, within H281DRAFT_04000at 105.575 kb on + strand, within H281DRAFT_04000at 105.575 kb on + strand, within H281DRAFT_04000at 105.575 kb on + strand, within H281DRAFT_04000at 105.575 kb on + strand, within H281DRAFT_04000at 105.576 kb on - strand, within H281DRAFT_04000at 105.576 kb on - strand, within H281DRAFT_04000at 105.676 kb on + strandat 105.676 kb on + strandat 105.677 kb on - strandat 105.677 kb on - strandat 105.707 kb on + strandat 105.740 kb on - strandat 105.812 kb on + strand, within H281DRAFT_04001at 105.896 kb on + strandat 105.921 kb on + strandat 105.964 kb on - strand, within H281DRAFT_04002at 105.969 kb on - strand, within H281DRAFT_04002at 106.024 kb on + strandat 106.204 kb on - strand, within H281DRAFT_04003at 106.570 kb on + strandat 106.599 kb on + strandat 106.600 kb on - strandat 106.794 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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104,872 + H281DRAFT_03999 0.89 +0.4
104,887 + -0.7
104,995 + +0.2
104,996 - +1.3
105,098 + -0.7
105,098 + +0.2
105,098 + +0.2
105,098 + -0.8
105,098 + -0.3
105,099 - -1.6
105,099 - -0.3
105,099 - -0.5
105,099 - -0.3
105,122 + -0.2
105,123 - +1.5
105,167 + H281DRAFT_04000 0.11 +0.1
105,167 + H281DRAFT_04000 0.11 +1.1
105,168 - H281DRAFT_04000 0.11 +0.3
105,168 - H281DRAFT_04000 0.11 -0.5
105,168 - H281DRAFT_04000 0.11 -0.3
105,415 + H281DRAFT_04000 0.51 +1.4
105,415 + H281DRAFT_04000 0.51 -0.7
105,415 + H281DRAFT_04000 0.51 -0.4
105,415 + H281DRAFT_04000 0.51 +0.3
105,416 - H281DRAFT_04000 0.51 -1.1
105,416 - H281DRAFT_04000 0.51 +0.0
105,440 + H281DRAFT_04000 0.55 +0.8
105,446 + H281DRAFT_04000 0.56 -0.1
105,446 + H281DRAFT_04000 0.56 -1.1
105,446 + H281DRAFT_04000 0.56 +0.3
105,447 - H281DRAFT_04000 0.56 +0.7
105,575 + H281DRAFT_04000 0.77 +0.2
105,575 + H281DRAFT_04000 0.77 +0.2
105,575 + H281DRAFT_04000 0.77 +1.8
105,575 + H281DRAFT_04000 0.77 +0.7
105,576 - H281DRAFT_04000 0.77 +0.1
105,576 - H281DRAFT_04000 0.77 -0.2
105,676 + -1.3
105,676 + +0.4
105,677 - -0.7
105,677 - +0.3
105,707 + +0.1
105,740 - +0.6
105,812 + H281DRAFT_04001 0.32 -0.7
105,896 + +0.9
105,921 + -0.2
105,964 - H281DRAFT_04002 0.27 -0.3
105,969 - H281DRAFT_04002 0.34 +0.7
106,024 + -0.9
106,204 - H281DRAFT_04003 0.18 -0.5
106,570 + +0.8
106,599 + -0.7
106,600 - +0.3
106,794 - -0.9

Or see this region's nucleotide sequence