Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03949

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03948 and H281DRAFT_03949 are separated by 298 nucleotidesH281DRAFT_03949 and H281DRAFT_03950 overlap by 47 nucleotidesH281DRAFT_03950 and H281DRAFT_03951 are separated by 56 nucleotides H281DRAFT_03948: H281DRAFT_03948 - metabolite-proton symporter, at 50,831 to 52,132 _03948 H281DRAFT_03949: H281DRAFT_03949 - Ribosomal protein S18 acetylase RimI, at 52,431 to 52,976 _03949 H281DRAFT_03950: H281DRAFT_03950 - hypothetical protein, at 52,930 to 53,124 _03950 H281DRAFT_03951: H281DRAFT_03951 - hypothetical protein, at 53,181 to 54,485 _03951 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1at 51.666 kb on + strand, within H281DRAFT_03948at 51.666 kb on + strand, within H281DRAFT_03948at 51.705 kb on + strand, within H281DRAFT_03948at 51.705 kb on + strand, within H281DRAFT_03948at 51.705 kb on + strand, within H281DRAFT_03948at 51.705 kb on + strand, within H281DRAFT_03948at 51.706 kb on - strandat 51.801 kb on + strand, within H281DRAFT_03948at 51.891 kb on + strand, within H281DRAFT_03948at 51.891 kb on + strand, within H281DRAFT_03948at 51.892 kb on - strand, within H281DRAFT_03948at 51.892 kb on - strand, within H281DRAFT_03948at 51.945 kb on - strand, within H281DRAFT_03948at 51.993 kb on + strand, within H281DRAFT_03948at 52.017 kb on + strandat 52.021 kb on - strandat 52.041 kb on + strandat 52.111 kb on + strandat 52.284 kb on + strandat 52.366 kb on + strandat 52.377 kb on + strandat 52.500 kb on - strand, within H281DRAFT_03949at 52.509 kb on - strand, within H281DRAFT_03949at 52.681 kb on + strand, within H281DRAFT_03949at 52.681 kb on + strand, within H281DRAFT_03949at 52.681 kb on + strand, within H281DRAFT_03949at 52.681 kb on + strand, within H281DRAFT_03949at 52.682 kb on - strand, within H281DRAFT_03949at 52.828 kb on - strand, within H281DRAFT_03949at 52.828 kb on - strand, within H281DRAFT_03949at 52.869 kb on + strand, within H281DRAFT_03949at 52.870 kb on - strand, within H281DRAFT_03949at 52.890 kb on + strand, within H281DRAFT_03949at 52.890 kb on + strand, within H281DRAFT_03949at 52.890 kb on + strand, within H281DRAFT_03949at 52.890 kb on + strand, within H281DRAFT_03949at 52.891 kb on - strand, within H281DRAFT_03949at 52.891 kb on - strand, within H281DRAFT_03949at 52.891 kb on - strand, within H281DRAFT_03949at 52.944 kb on + strandat 52.945 kb on - strandat 53.161 kb on + strandat 53.161 kb on + strandat 53.162 kb on - strandat 53.234 kb on - strandat 53.264 kb on - strandat 53.264 kb on - strandat 53.327 kb on - strand, within H281DRAFT_03951at 53.332 kb on + strand, within H281DRAFT_03951at 53.333 kb on - strand, within H281DRAFT_03951at 53.561 kb on + strand, within H281DRAFT_03951at 53.858 kb on + strand, within H281DRAFT_03951at 53.858 kb on + strand, within H281DRAFT_03951at 53.875 kb on + strand, within H281DRAFT_03951at 53.875 kb on + strand, within H281DRAFT_03951at 53.875 kb on + strand, within H281DRAFT_03951at 53.876 kb on - strand, within H281DRAFT_03951at 53.876 kb on - strand, within H281DRAFT_03951

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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51,666 + H281DRAFT_03948 0.64 -0.6
51,666 + H281DRAFT_03948 0.64 -1.4
51,705 + H281DRAFT_03948 0.67 -2.4
51,705 + H281DRAFT_03948 0.67 +0.2
51,705 + H281DRAFT_03948 0.67 -1.1
51,705 + H281DRAFT_03948 0.67 -2.0
51,706 - -1.3
51,801 + H281DRAFT_03948 0.75 -0.3
51,891 + H281DRAFT_03948 0.81 +0.5
51,891 + H281DRAFT_03948 0.81 -0.8
51,892 - H281DRAFT_03948 0.81 -1.5
51,892 - H281DRAFT_03948 0.81 +0.1
51,945 - H281DRAFT_03948 0.86 -0.8
51,993 + H281DRAFT_03948 0.89 -0.8
52,017 + -0.6
52,021 - -0.1
52,041 + -0.0
52,111 + -0.3
52,284 + -0.6
52,366 + +0.3
52,377 + +0.2
52,500 - H281DRAFT_03949 0.13 +0.8
52,509 - H281DRAFT_03949 0.14 +0.3
52,681 + H281DRAFT_03949 0.46 -0.7
52,681 + H281DRAFT_03949 0.46 -1.9
52,681 + H281DRAFT_03949 0.46 -0.2
52,681 + H281DRAFT_03949 0.46 -1.3
52,682 - H281DRAFT_03949 0.46 +0.9
52,828 - H281DRAFT_03949 0.73 +1.1
52,828 - H281DRAFT_03949 0.73 +0.1
52,869 + H281DRAFT_03949 0.80 -0.6
52,870 - H281DRAFT_03949 0.80 +0.6
52,890 + H281DRAFT_03949 0.84 -1.1
52,890 + H281DRAFT_03949 0.84 +0.6
52,890 + H281DRAFT_03949 0.84 -0.8
52,890 + H281DRAFT_03949 0.84 +0.6
52,891 - H281DRAFT_03949 0.84 +0.7
52,891 - H281DRAFT_03949 0.84 -1.3
52,891 - H281DRAFT_03949 0.84 -0.3
52,944 + -0.7
52,945 - +0.7
53,161 + -0.7
53,161 + +0.9
53,162 - +0.3
53,234 - -0.4
53,264 - -0.1
53,264 - -0.1
53,327 - H281DRAFT_03951 0.11 +0.1
53,332 + H281DRAFT_03951 0.12 -0.6
53,333 - H281DRAFT_03951 0.12 -0.1
53,561 + H281DRAFT_03951 0.29 +0.3
53,858 + H281DRAFT_03951 0.52 -0.2
53,858 + H281DRAFT_03951 0.52 -0.3
53,875 + H281DRAFT_03951 0.53 +1.3
53,875 + H281DRAFT_03951 0.53 +0.1
53,875 + H281DRAFT_03951 0.53 -0.6
53,876 - H281DRAFT_03951 0.53 -0.9
53,876 - H281DRAFT_03951 0.53 -1.1

Or see this region's nucleotide sequence