Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03563 and H281DRAFT_03564 are separated by 69 nucleotides H281DRAFT_03564 and H281DRAFT_03565 are separated by 30 nucleotides H281DRAFT_03565 and H281DRAFT_03566 are separated by 244 nucleotides
H281DRAFT_03563: H281DRAFT_03563 - FAD/FMN-containing dehydrogenase, at 68,942 to 71,962
_03563
H281DRAFT_03564: H281DRAFT_03564 - 2-keto-4-pentenoate hydratase, at 72,032 to 72,790
_03564
H281DRAFT_03565: H281DRAFT_03565 - Sugar phosphate permease, at 72,821 to 74,107
_03565
H281DRAFT_03566: H281DRAFT_03566 - alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 74,352 to 75,572
_03566
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.869 kb on + strand at 71.869 kb on + strand at 71.870 kb on - strand at 71.963 kb on - strand at 72.036 kb on + strand at 72.118 kb on - strand, within H281DRAFT_03564 at 72.300 kb on + strand, within H281DRAFT_03564 at 72.454 kb on + strand, within H281DRAFT_03564 at 72.454 kb on + strand, within H281DRAFT_03564 at 72.455 kb on - strand, within H281DRAFT_03564 at 72.456 kb on + strand, within H281DRAFT_03564 at 72.456 kb on + strand, within H281DRAFT_03564 at 72.456 kb on + strand, within H281DRAFT_03564 at 72.457 kb on - strand, within H281DRAFT_03564 at 72.812 kb on - strand at 72.812 kb on - strand at 72.823 kb on - strand at 72.823 kb on - strand at 72.932 kb on - strand at 73.146 kb on + strand at 73.147 kb on - strand, within H281DRAFT_03565 at 73.147 kb on - strand, within H281DRAFT_03565 at 73.251 kb on + strand, within H281DRAFT_03565 at 73.251 kb on + strand, within H281DRAFT_03565 at 73.252 kb on - strand, within H281DRAFT_03565 at 73.365 kb on + strand, within H281DRAFT_03565 at 73.365 kb on + strand, within H281DRAFT_03565 at 73.366 kb on - strand, within H281DRAFT_03565 at 73.408 kb on - strand, within H281DRAFT_03565 at 73.416 kb on + strand, within H281DRAFT_03565 at 73.416 kb on + strand, within H281DRAFT_03565 at 73.426 kb on + strand, within H281DRAFT_03565 at 73.496 kb on + strand, within H281DRAFT_03565 at 73.520 kb on - strand at 73.599 kb on + strand, within H281DRAFT_03565 at 73.600 kb on - strand, within H281DRAFT_03565 at 73.873 kb on + strand, within H281DRAFT_03565 at 73.874 kb on - strand at 73.897 kb on + strand, within H281DRAFT_03565 at 73.929 kb on + strand, within H281DRAFT_03565 at 73.929 kb on + strand, within H281DRAFT_03565 at 73.930 kb on - strand, within H281DRAFT_03565 at 73.930 kb on - strand, within H281DRAFT_03565 at 74.012 kb on - strand at 74.034 kb on + strand at 74.034 kb on + strand at 74.034 kb on + strand at 74.046 kb on + strand at 74.047 kb on - strand at 74.066 kb on + strand at 74.066 kb on + strand at 74.067 kb on - strand at 74.074 kb on + strand at 74.174 kb on + strand at 74.581 kb on + strand, within H281DRAFT_03566 at 74.582 kb on - strand, within H281DRAFT_03566 at 74.648 kb on + strand, within H281DRAFT_03566 at 74.649 kb on - strand, within H281DRAFT_03566 at 74.650 kb on + strand, within H281DRAFT_03566 at 74.651 kb on - strand, within H281DRAFT_03566 at 74.652 kb on + strand, within H281DRAFT_03566 at 74.652 kb on + strand, within H281DRAFT_03566 at 74.653 kb on - strand, within H281DRAFT_03566 at 74.653 kb on - strand, within H281DRAFT_03566 at 74.653 kb on - strand, within H281DRAFT_03566
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 71,869 + -0.4 71,869 + +0.0 71,870 - +0.3 71,963 - -0.5 72,036 + -1.2 72,118 - H281DRAFT_03564 0.11 +2.3 72,300 + H281DRAFT_03564 0.35 +0.1 72,454 + H281DRAFT_03564 0.56 -3.0 72,454 + H281DRAFT_03564 0.56 +0.6 72,455 - H281DRAFT_03564 0.56 -0.2 72,456 + H281DRAFT_03564 0.56 +0.5 72,456 + H281DRAFT_03564 0.56 +0.3 72,456 + H281DRAFT_03564 0.56 +1.9 72,457 - H281DRAFT_03564 0.56 +0.4 72,812 - -0.6 72,812 - -3.3 72,823 - -0.9 72,823 - -0.2 72,932 - -0.3 73,146 + +0.1 73,147 - H281DRAFT_03565 0.25 +1.4 73,147 - H281DRAFT_03565 0.25 -0.1 73,251 + H281DRAFT_03565 0.33 -0.8 73,251 + H281DRAFT_03565 0.33 +0.5 73,252 - H281DRAFT_03565 0.33 +1.1 73,365 + H281DRAFT_03565 0.42 +2.3 73,365 + H281DRAFT_03565 0.42 +0.6 73,366 - H281DRAFT_03565 0.42 +0.9 73,408 - H281DRAFT_03565 0.46 -0.1 73,416 + H281DRAFT_03565 0.46 -0.9 73,416 + H281DRAFT_03565 0.46 -0.0 73,426 + H281DRAFT_03565 0.47 +0.1 73,496 + H281DRAFT_03565 0.52 +0.3 73,520 - +2.6 73,599 + H281DRAFT_03565 0.60 +0.1 73,600 - H281DRAFT_03565 0.61 +0.7 73,873 + H281DRAFT_03565 0.82 +1.1 73,874 - +0.8 73,897 + H281DRAFT_03565 0.84 -1.0 73,929 + H281DRAFT_03565 0.86 -0.4 73,929 + H281DRAFT_03565 0.86 +1.6 73,930 - H281DRAFT_03565 0.86 -0.2 73,930 - H281DRAFT_03565 0.86 -1.6 74,012 - -1.0 74,034 + -0.9 74,034 + +0.0 74,034 + -0.4 74,046 + +0.5 74,047 - +0.1 74,066 + +0.5 74,066 + +0.1 74,067 - -0.1 74,074 + -0.4 74,174 + +0.6 74,581 + H281DRAFT_03566 0.19 +0.4 74,582 - H281DRAFT_03566 0.19 +0.8 74,648 + H281DRAFT_03566 0.24 -0.1 74,649 - H281DRAFT_03566 0.24 +0.4 74,650 + H281DRAFT_03566 0.24 -0.0 74,651 - H281DRAFT_03566 0.24 +0.7 74,652 + H281DRAFT_03566 0.25 +0.2 74,652 + H281DRAFT_03566 0.25 +0.5 74,653 - H281DRAFT_03566 0.25 -0.2 74,653 - H281DRAFT_03566 0.25 -1.2 74,653 - H281DRAFT_03566 0.25 -0.1
Or see this region's nucleotide sequence