Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03540 and H281DRAFT_03541 overlap by 4 nucleotides H281DRAFT_03541 and H281DRAFT_03542 are separated by 52 nucleotides
H281DRAFT_03540: H281DRAFT_03540 - succinate semialdehyde dehydrogenase (EC 1.2.1.16), at 40,894 to 42,333
_03540
H281DRAFT_03541: H281DRAFT_03541 - Predicted oxidoreductase, at 42,330 to 43,367
_03541
H281DRAFT_03542: H281DRAFT_03542 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 43,420 to 43,944
_03542
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.447 kb on + strand, within H281DRAFT_03540 at 41.447 kb on + strand, within H281DRAFT_03540 at 41.677 kb on + strand, within H281DRAFT_03540 at 41.677 kb on + strand at 41.677 kb on + strand, within H281DRAFT_03540 at 41.678 kb on - strand, within H281DRAFT_03540 at 41.678 kb on - strand, within H281DRAFT_03540 at 41.972 kb on + strand, within H281DRAFT_03540 at 41.973 kb on - strand, within H281DRAFT_03540 at 42.223 kb on - strand at 42.287 kb on + strand at 42.287 kb on + strand at 42.287 kb on + strand at 42.305 kb on + strand at 42.305 kb on + strand at 42.410 kb on - strand at 42.436 kb on + strand, within H281DRAFT_03541 at 42.437 kb on - strand, within H281DRAFT_03541 at 42.492 kb on + strand, within H281DRAFT_03541 at 42.711 kb on + strand, within H281DRAFT_03541 at 42.889 kb on + strand, within H281DRAFT_03541 at 42.889 kb on + strand, within H281DRAFT_03541 at 42.889 kb on + strand, within H281DRAFT_03541 at 42.910 kb on + strand, within H281DRAFT_03541 at 42.910 kb on + strand, within H281DRAFT_03541 at 42.911 kb on - strand, within H281DRAFT_03541 at 42.997 kb on + strand, within H281DRAFT_03541 at 42.997 kb on + strand, within H281DRAFT_03541 at 42.998 kb on - strand, within H281DRAFT_03541 at 43.009 kb on + strand, within H281DRAFT_03541 at 43.193 kb on - strand, within H281DRAFT_03541 at 43.360 kb on + strand at 43.360 kb on + strand at 43.361 kb on - strand at 43.440 kb on - strand at 43.440 kb on - strand at 43.440 kb on - strand at 43.440 kb on - strand at 43.872 kb on + strand, within H281DRAFT_03542 at 43.873 kb on - strand, within H281DRAFT_03542 at 43.873 kb on - strand, within H281DRAFT_03542 at 44.003 kb on + strand at 44.004 kb on - strand at 44.004 kb on - strand at 44.004 kb on - strand at 44.004 kb on - strand at 44.004 kb on - strand at 44.026 kb on + strand at 44.027 kb on - strand at 44.104 kb on + strand at 44.105 kb on - strand at 44.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 41,447 + H281DRAFT_03540 0.38 -0.5 41,447 + H281DRAFT_03540 0.38 +0.7 41,677 + H281DRAFT_03540 0.54 -0.9 41,677 + +1.1 41,677 + H281DRAFT_03540 0.54 +0.2 41,678 - H281DRAFT_03540 0.54 -0.1 41,678 - H281DRAFT_03540 0.54 -0.5 41,972 + H281DRAFT_03540 0.75 +0.6 41,973 - H281DRAFT_03540 0.75 +0.7 42,223 - +0.4 42,287 + +0.1 42,287 + -0.6 42,287 + -0.4 42,305 + +1.6 42,305 + -1.0 42,410 - -0.7 42,436 + H281DRAFT_03541 0.10 +0.8 42,437 - H281DRAFT_03541 0.10 -0.4 42,492 + H281DRAFT_03541 0.16 -0.1 42,711 + H281DRAFT_03541 0.37 -0.9 42,889 + H281DRAFT_03541 0.54 +2.7 42,889 + H281DRAFT_03541 0.54 -0.4 42,889 + H281DRAFT_03541 0.54 -0.3 42,910 + H281DRAFT_03541 0.56 -1.4 42,910 + H281DRAFT_03541 0.56 -0.6 42,911 - H281DRAFT_03541 0.56 -0.1 42,997 + H281DRAFT_03541 0.64 -0.1 42,997 + H281DRAFT_03541 0.64 +0.6 42,998 - H281DRAFT_03541 0.64 +0.2 43,009 + H281DRAFT_03541 0.65 +0.6 43,193 - H281DRAFT_03541 0.83 +0.3 43,360 + +0.3 43,360 + -0.4 43,361 - +0.2 43,440 - +0.6 43,440 - +0.2 43,440 - +0.2 43,440 - +1.4 43,872 + H281DRAFT_03542 0.86 -0.3 43,873 - H281DRAFT_03542 0.86 -2.3 43,873 - H281DRAFT_03542 0.86 -1.1 44,003 + +0.2 44,004 - -0.4 44,004 - -0.5 44,004 - -0.6 44,004 - -0.5 44,004 - +0.8 44,026 + +1.7 44,027 - -1.9 44,104 + -0.0 44,105 - -1.7 44,105 - +0.7
Or see this region's nucleotide sequence