Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03423

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03422 and H281DRAFT_03423 are separated by 18 nucleotidesH281DRAFT_03423 and H281DRAFT_03424 are separated by 88 nucleotides H281DRAFT_03422: H281DRAFT_03422 - dihydroxyacid dehydratase (EC 4.2.1.9), at 495,717 to 497,495 _03422 H281DRAFT_03423: H281DRAFT_03423 - Regulator of RNase E activity RraA, at 497,514 to 498,248 _03423 H281DRAFT_03424: H281DRAFT_03424 - Sugar phosphate permease, at 498,337 to 499,665 _03424 Position (kb) 497 498 499Strain fitness (log2 ratio) -1 0 1at 497.126 kb on + strand, within H281DRAFT_03422at 498.290 kb on - strandat 498.911 kb on + strand, within H281DRAFT_03424at 499.099 kb on + strand, within H281DRAFT_03424at 499.102 kb on + strand, within H281DRAFT_03424at 499.172 kb on + strand, within H281DRAFT_03424at 499.173 kb on - strand, within H281DRAFT_03424at 499.176 kb on + strand, within H281DRAFT_03424at 499.176 kb on + strand, within H281DRAFT_03424at 499.177 kb on - strand, within H281DRAFT_03424at 499.179 kb on + strand, within H281DRAFT_03424at 499.179 kb on + strand, within H281DRAFT_03424

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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497,126 + H281DRAFT_03422 0.79 +0.5
498,290 - -0.8
498,911 + H281DRAFT_03424 0.43 +0.1
499,099 + H281DRAFT_03424 0.57 +1.2
499,102 + H281DRAFT_03424 0.58 +0.2
499,172 + H281DRAFT_03424 0.63 +1.5
499,173 - H281DRAFT_03424 0.63 -0.5
499,176 + H281DRAFT_03424 0.63 +0.1
499,176 + H281DRAFT_03424 0.63 +0.9
499,177 - H281DRAFT_03424 0.63 -1.4
499,179 + H281DRAFT_03424 0.63 +0.9
499,179 + H281DRAFT_03424 0.63 +0.2

Or see this region's nucleotide sequence