Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03390

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03389 and H281DRAFT_03390 are separated by 182 nucleotidesH281DRAFT_03390 and H281DRAFT_03391 are separated by 116 nucleotides H281DRAFT_03389: H281DRAFT_03389 - transcriptional regulator, LysR family, at 457,109 to 458,041 _03389 H281DRAFT_03390: H281DRAFT_03390 - H+/Cl- antiporter ClcA, at 458,224 to 459,510 _03390 H281DRAFT_03391: H281DRAFT_03391 - DNA-binding transcriptional regulator, LysR family, at 459,627 to 460,595 _03391 Position (kb) 458 459 460Strain fitness (log2 ratio) -2 -1 0 1 2at 457.302 kb on - strand, within H281DRAFT_03389at 457.412 kb on + strand, within H281DRAFT_03389at 457.412 kb on + strand, within H281DRAFT_03389at 457.601 kb on + strand, within H281DRAFT_03389at 457.691 kb on + strand, within H281DRAFT_03389at 457.691 kb on + strand, within H281DRAFT_03389at 457.956 kb on - strandat 458.084 kb on - strandat 458.313 kb on + strandat 458.313 kb on + strandat 458.722 kb on + strand, within H281DRAFT_03390at 458.864 kb on - strand, within H281DRAFT_03390at 458.929 kb on - strand, within H281DRAFT_03390at 459.402 kb on - strandat 459.402 kb on - strandat 459.508 kb on + strandat 459.509 kb on - strandat 459.766 kb on + strand, within H281DRAFT_03391at 459.785 kb on + strand, within H281DRAFT_03391at 459.785 kb on + strand, within H281DRAFT_03391at 459.786 kb on - strand, within H281DRAFT_03391at 459.814 kb on + strand, within H281DRAFT_03391at 459.926 kb on + strand, within H281DRAFT_03391at 460.399 kb on + strand, within H281DRAFT_03391at 460.400 kb on - strand, within H281DRAFT_03391

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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457,302 - H281DRAFT_03389 0.21 -0.6
457,412 + H281DRAFT_03389 0.32 -0.3
457,412 + H281DRAFT_03389 0.32 +1.3
457,601 + H281DRAFT_03389 0.53 +0.9
457,691 + H281DRAFT_03389 0.62 +0.9
457,691 + H281DRAFT_03389 0.62 +1.3
457,956 - +0.1
458,084 - +0.3
458,313 + +0.1
458,313 + -0.4
458,722 + H281DRAFT_03390 0.39 -1.2
458,864 - H281DRAFT_03390 0.50 -0.9
458,929 - H281DRAFT_03390 0.55 -2.1
459,402 - +2.5
459,402 - -0.2
459,508 + +0.7
459,509 - -0.3
459,766 + H281DRAFT_03391 0.14 +0.9
459,785 + H281DRAFT_03391 0.16 -2.1
459,785 + H281DRAFT_03391 0.16 +0.6
459,786 - H281DRAFT_03391 0.16 -0.3
459,814 + H281DRAFT_03391 0.19 -0.6
459,926 + H281DRAFT_03391 0.31 +0.0
460,399 + H281DRAFT_03391 0.80 +1.2
460,400 - H281DRAFT_03391 0.80 -0.3

Or see this region's nucleotide sequence