Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02658

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02656 and H281DRAFT_02657 are separated by 102 nucleotidesH281DRAFT_02657 and H281DRAFT_02658 are separated by 28 nucleotidesH281DRAFT_02658 and H281DRAFT_02659 are separated by 115 nucleotides H281DRAFT_02656: H281DRAFT_02656 - Glyoxylase, beta-lactamase superfamily II, at 236,753 to 237,790 _02656 H281DRAFT_02657: H281DRAFT_02657 - cyanate lyase, at 237,893 to 238,363 _02657 H281DRAFT_02658: H281DRAFT_02658 - carbonic anhydrase, at 238,392 to 239,051 _02658 H281DRAFT_02659: H281DRAFT_02659 - LysR family transcriptional regulator, cyn operon transcriptional activator, at 239,167 to 240,051 _02659 Position (kb) 238 239 240Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 237.484 kb on + strand, within H281DRAFT_02656at 238.508 kb on - strand, within H281DRAFT_02658at 238.805 kb on - strand, within H281DRAFT_02658at 238.944 kb on - strand, within H281DRAFT_02658at 239.111 kb on - strandat 239.294 kb on + strand, within H281DRAFT_02659at 240.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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237,484 + H281DRAFT_02656 0.70 +1.4
238,508 - H281DRAFT_02658 0.18 -0.2
238,805 - H281DRAFT_02658 0.63 +1.4
238,944 - H281DRAFT_02658 0.84 -0.1
239,111 - -0.5
239,294 + H281DRAFT_02659 0.14 +0.4
240,050 - -4.1

Or see this region's nucleotide sequence