Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02472

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02471 and H281DRAFT_02472 are separated by 2 nucleotidesH281DRAFT_02472 and H281DRAFT_02473 are separated by 4 nucleotides H281DRAFT_02471: H281DRAFT_02471 - 2,4-dienoyl-CoA reductase, at 40,238 to 42,301 _02471 H281DRAFT_02472: H281DRAFT_02472 - Fe-S oxidoreductase, at 42,304 to 44,217 _02472 H281DRAFT_02473: H281DRAFT_02473 - electron transfer flavoprotein alpha subunit apoprotein, at 44,222 to 45,391 _02473 Position (kb) 42 43 44 45Strain fitness (log2 ratio) -1 0 1at 41.636 kb on - strand, within H281DRAFT_02471at 41.902 kb on - strand, within H281DRAFT_02471at 41.939 kb on + strand, within H281DRAFT_02471at 41.988 kb on - strand, within H281DRAFT_02471at 42.155 kb on - strandat 42.422 kb on - strandat 42.422 kb on - strandat 42.566 kb on - strand, within H281DRAFT_02472at 43.436 kb on - strand, within H281DRAFT_02472at 43.795 kb on + strand, within H281DRAFT_02472at 43.796 kb on - strand, within H281DRAFT_02472at 43.796 kb on - strand, within H281DRAFT_02472at 43.802 kb on + strand, within H281DRAFT_02472at 43.803 kb on - strand, within H281DRAFT_02472at 44.181 kb on - strandat 44.636 kb on + strand, within H281DRAFT_02473at 45.146 kb on + strand, within H281DRAFT_02473at 45.147 kb on - strand, within H281DRAFT_02473

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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41,636 - H281DRAFT_02471 0.68 -0.1
41,902 - H281DRAFT_02471 0.81 -1.3
41,939 + H281DRAFT_02471 0.82 +0.2
41,988 - H281DRAFT_02471 0.85 +0.4
42,155 - -0.4
42,422 - +1.0
42,422 - +0.2
42,566 - H281DRAFT_02472 0.14 +0.6
43,436 - H281DRAFT_02472 0.59 +0.4
43,795 + H281DRAFT_02472 0.78 +0.3
43,796 - H281DRAFT_02472 0.78 -1.4
43,796 - H281DRAFT_02472 0.78 +0.6
43,802 + H281DRAFT_02472 0.78 -0.4
43,803 - H281DRAFT_02472 0.78 +0.6
44,181 - +0.0
44,636 + H281DRAFT_02473 0.35 +0.0
45,146 + H281DRAFT_02473 0.79 -0.4
45,147 - H281DRAFT_02473 0.79 -0.6

Or see this region's nucleotide sequence