Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02407 and H281DRAFT_02408 are separated by 27 nucleotides H281DRAFT_02408 and H281DRAFT_02409 are separated by 116 nucleotides
H281DRAFT_02407: H281DRAFT_02407 - L-serine ammonia-lyase, at 578,136 to 579,524
_02407
H281DRAFT_02408: H281DRAFT_02408 - Alginate lyase, at 579,552 to 580,682
_02408
H281DRAFT_02409: H281DRAFT_02409 - glycine dehydrogenase, at 580,799 to 583,735
_02409
Position (kb) 579
580
581 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 578.605 kb on + strand, within H281DRAFT_02407 at 578.606 kb on - strand, within H281DRAFT_02407 at 578.606 kb on - strand, within H281DRAFT_02407 at 578.606 kb on - strand, within H281DRAFT_02407 at 579.047 kb on + strand, within H281DRAFT_02407 at 579.094 kb on + strand, within H281DRAFT_02407 at 579.094 kb on + strand, within H281DRAFT_02407 at 579.095 kb on - strand, within H281DRAFT_02407 at 579.095 kb on - strand, within H281DRAFT_02407 at 579.324 kb on + strand, within H281DRAFT_02407 at 579.324 kb on + strand, within H281DRAFT_02407 at 579.525 kb on + strand at 579.525 kb on + strand at 579.526 kb on - strand at 579.553 kb on + strand at 579.627 kb on - strand at 579.628 kb on + strand at 579.629 kb on - strand at 579.905 kb on - strand, within H281DRAFT_02408 at 579.913 kb on + strand, within H281DRAFT_02408 at 579.913 kb on + strand, within H281DRAFT_02408 at 579.914 kb on - strand, within H281DRAFT_02408 at 579.914 kb on - strand, within H281DRAFT_02408 at 579.977 kb on + strand, within H281DRAFT_02408 at 579.978 kb on - strand, within H281DRAFT_02408 at 579.978 kb on - strand, within H281DRAFT_02408 at 579.978 kb on - strand, within H281DRAFT_02408 at 579.978 kb on - strand, within H281DRAFT_02408 at 580.084 kb on + strand, within H281DRAFT_02408 at 580.207 kb on + strand, within H281DRAFT_02408 at 580.265 kb on - strand, within H281DRAFT_02408 at 580.265 kb on - strand, within H281DRAFT_02408 at 580.282 kb on + strand, within H281DRAFT_02408 at 580.393 kb on + strand at 580.393 kb on + strand, within H281DRAFT_02408 at 580.394 kb on - strand, within H281DRAFT_02408 at 580.394 kb on - strand, within H281DRAFT_02408 at 580.612 kb on + strand at 580.612 kb on + strand at 580.613 kb on - strand at 580.800 kb on + strand at 580.800 kb on + strand at 580.851 kb on + strand at 580.851 kb on + strand at 580.852 kb on - strand at 580.884 kb on + strand at 580.884 kb on + strand at 580.885 kb on - strand at 580.915 kb on - strand at 580.935 kb on + strand at 580.935 kb on + strand at 581.164 kb on - strand, within H281DRAFT_02409 at 581.271 kb on + strand, within H281DRAFT_02409 at 581.271 kb on + strand, within H281DRAFT_02409 at 581.272 kb on - strand, within H281DRAFT_02409 at 581.272 kb on - strand, within H281DRAFT_02409 at 581.310 kb on + strand, within H281DRAFT_02409 at 581.310 kb on + strand, within H281DRAFT_02409 at 581.311 kb on - strand at 581.376 kb on + strand, within H281DRAFT_02409 at 581.376 kb on + strand, within H281DRAFT_02409 at 581.377 kb on - strand, within H281DRAFT_02409 at 581.377 kb on - strand, within H281DRAFT_02409 at 581.377 kb on - strand, within H281DRAFT_02409 at 581.377 kb on - strand, within H281DRAFT_02409 at 581.377 kb on - strand, within H281DRAFT_02409 at 581.377 kb on - strand, within H281DRAFT_02409 at 581.412 kb on + strand, within H281DRAFT_02409 at 581.412 kb on + strand, within H281DRAFT_02409 at 581.438 kb on - strand, within H281DRAFT_02409 at 581.458 kb on - strand, within H281DRAFT_02409 at 581.646 kb on + strand, within H281DRAFT_02409 at 581.646 kb on + strand, within H281DRAFT_02409 at 581.646 kb on + strand, within H281DRAFT_02409 at 581.646 kb on + strand, within H281DRAFT_02409
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 578,605 + H281DRAFT_02407 0.34 -0.7 578,606 - H281DRAFT_02407 0.34 +0.5 578,606 - H281DRAFT_02407 0.34 -0.2 578,606 - H281DRAFT_02407 0.34 -0.3 579,047 + H281DRAFT_02407 0.66 -0.7 579,094 + H281DRAFT_02407 0.69 -0.0 579,094 + H281DRAFT_02407 0.69 -0.1 579,095 - H281DRAFT_02407 0.69 -0.5 579,095 - H281DRAFT_02407 0.69 -1.0 579,324 + H281DRAFT_02407 0.86 -0.6 579,324 + H281DRAFT_02407 0.86 -0.0 579,525 + -0.8 579,525 + -1.9 579,526 - -0.3 579,553 + -0.4 579,627 - +0.9 579,628 + -1.0 579,629 - -0.3 579,905 - H281DRAFT_02408 0.31 +0.1 579,913 + H281DRAFT_02408 0.32 +1.0 579,913 + H281DRAFT_02408 0.32 +0.3 579,914 - H281DRAFT_02408 0.32 +0.0 579,914 - H281DRAFT_02408 0.32 -0.2 579,977 + H281DRAFT_02408 0.38 +0.2 579,978 - H281DRAFT_02408 0.38 +0.8 579,978 - H281DRAFT_02408 0.38 +0.4 579,978 - H281DRAFT_02408 0.38 +0.1 579,978 - H281DRAFT_02408 0.38 +1.3 580,084 + H281DRAFT_02408 0.47 +0.6 580,207 + H281DRAFT_02408 0.58 +0.2 580,265 - H281DRAFT_02408 0.63 +0.9 580,265 - H281DRAFT_02408 0.63 +1.4 580,282 + H281DRAFT_02408 0.65 +0.9 580,393 + +0.3 580,393 + H281DRAFT_02408 0.74 -0.7 580,394 - H281DRAFT_02408 0.74 +0.1 580,394 - H281DRAFT_02408 0.74 +1.5 580,612 + +1.0 580,612 + -0.9 580,613 - -0.0 580,800 + +0.1 580,800 + +0.8 580,851 + -4.0 580,851 + -2.1 580,852 - -0.1 580,884 + +2.3 580,884 + -0.3 580,885 - -1.3 580,915 - +0.6 580,935 + +0.2 580,935 + -0.4 581,164 - H281DRAFT_02409 0.12 +0.3 581,271 + H281DRAFT_02409 0.16 +0.5 581,271 + H281DRAFT_02409 0.16 -0.8 581,272 - H281DRAFT_02409 0.16 +0.5 581,272 - H281DRAFT_02409 0.16 +1.3 581,310 + H281DRAFT_02409 0.17 +0.1 581,310 + H281DRAFT_02409 0.17 -0.0 581,311 - -1.0 581,376 + H281DRAFT_02409 0.20 -0.1 581,376 + H281DRAFT_02409 0.20 +1.1 581,377 - H281DRAFT_02409 0.20 -0.4 581,377 - H281DRAFT_02409 0.20 +0.5 581,377 - H281DRAFT_02409 0.20 -0.0 581,377 - H281DRAFT_02409 0.20 +0.3 581,377 - H281DRAFT_02409 0.20 -0.2 581,377 - H281DRAFT_02409 0.20 +0.2 581,412 + H281DRAFT_02409 0.21 -1.7 581,412 + H281DRAFT_02409 0.21 -0.4 581,438 - H281DRAFT_02409 0.22 -0.9 581,458 - H281DRAFT_02409 0.22 +1.3 581,646 + H281DRAFT_02409 0.29 -0.1 581,646 + H281DRAFT_02409 0.29 +0.9 581,646 + H281DRAFT_02409 0.29 -0.3 581,646 + H281DRAFT_02409 0.29 -1.0
Or see this region's nucleotide sequence