Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02309 and H281DRAFT_02310 are separated by 111 nucleotides H281DRAFT_02310 and H281DRAFT_02311 are separated by 28 nucleotides H281DRAFT_02311 and H281DRAFT_02312 are separated by 2 nucleotides
H281DRAFT_02309: H281DRAFT_02309 - Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion, at 459,902 to 460,189
_02309
H281DRAFT_02310: H281DRAFT_02310 - hypothetical protein, at 460,301 to 461,080
_02310
H281DRAFT_02311: H281DRAFT_02311 - hypothetical protein, at 461,109 to 462,521
_02311
H281DRAFT_02312: H281DRAFT_02312 - type VI secretion system secreted protein VgrG, at 462,524 to 465,202
_02312
Position (kb) 461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 460.177 kb on + strand at 460.177 kb on + strand at 460.177 kb on + strand at 460.177 kb on + strand at 460.178 kb on - strand at 460.178 kb on - strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.193 kb on + strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.194 kb on - strand at 460.195 kb on + strand at 460.195 kb on + strand at 460.195 kb on + strand at 460.195 kb on + strand at 460.196 kb on - strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.284 kb on + strand at 460.285 kb on - strand at 460.285 kb on - strand at 460.302 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.119 kb on + strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.120 kb on - strand at 461.140 kb on + strand at 461.140 kb on + strand at 461.140 kb on + strand at 461.140 kb on + strand at 461.141 kb on - strand at 461.167 kb on + strand at 461.295 kb on + strand, within H281DRAFT_02311 at 461.295 kb on + strand, within H281DRAFT_02311 at 461.295 kb on + strand, within H281DRAFT_02311 at 461.296 kb on - strand, within H281DRAFT_02311 at 461.296 kb on - strand, within H281DRAFT_02311 at 461.296 kb on - strand, within H281DRAFT_02311 at 461.298 kb on + strand, within H281DRAFT_02311 at 461.363 kb on + strand, within H281DRAFT_02311 at 461.363 kb on + strand, within H281DRAFT_02311 at 461.363 kb on + strand, within H281DRAFT_02311 at 461.364 kb on - strand, within H281DRAFT_02311 at 461.364 kb on - strand, within H281DRAFT_02311 at 461.364 kb on - strand, within H281DRAFT_02311 at 461.470 kb on + strand, within H281DRAFT_02311 at 461.471 kb on - strand, within H281DRAFT_02311 at 461.493 kb on - strand, within H281DRAFT_02311 at 461.657 kb on + strand, within H281DRAFT_02311 at 461.657 kb on + strand, within H281DRAFT_02311 at 461.657 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.689 kb on + strand, within H281DRAFT_02311 at 461.690 kb on - strand, within H281DRAFT_02311 at 461.690 kb on - strand, within H281DRAFT_02311 at 461.690 kb on - strand, within H281DRAFT_02311 at 461.728 kb on - strand at 461.728 kb on - strand, within H281DRAFT_02311 at 461.728 kb on - strand, within H281DRAFT_02311 at 461.808 kb on + strand, within H281DRAFT_02311 at 461.808 kb on + strand, within H281DRAFT_02311 at 461.808 kb on + strand, within H281DRAFT_02311 at 461.809 kb on - strand, within H281DRAFT_02311 at 461.812 kb on - strand, within H281DRAFT_02311 at 461.837 kb on + strand, within H281DRAFT_02311 at 461.837 kb on + strand, within H281DRAFT_02311 at 461.837 kb on + strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.838 kb on - strand, within H281DRAFT_02311 at 461.844 kb on + strand, within H281DRAFT_02311 at 461.844 kb on + strand, within H281DRAFT_02311 at 461.845 kb on - strand, within H281DRAFT_02311 at 461.845 kb on - strand, within H281DRAFT_02311 at 461.845 kb on - strand, within H281DRAFT_02311 at 461.852 kb on + strand, within H281DRAFT_02311 at 461.852 kb on + strand, within H281DRAFT_02311 at 461.852 kb on + strand, within H281DRAFT_02311 at 462.037 kb on + strand, within H281DRAFT_02311 at 462.037 kb on + strand, within H281DRAFT_02311 at 462.038 kb on - strand, within H281DRAFT_02311 at 462.038 kb on - strand, within H281DRAFT_02311 at 462.061 kb on + strand, within H281DRAFT_02311 at 462.061 kb on + strand, within H281DRAFT_02311 at 462.062 kb on - strand at 462.062 kb on - strand, within H281DRAFT_02311 at 462.062 kb on - strand, within H281DRAFT_02311 at 462.083 kb on + strand, within H281DRAFT_02311 at 462.083 kb on + strand, within H281DRAFT_02311 at 462.084 kb on - strand, within H281DRAFT_02311 at 462.186 kb on - strand, within H281DRAFT_02311 at 462.193 kb on - strand, within H281DRAFT_02311 at 462.214 kb on + strand, within H281DRAFT_02311 at 462.214 kb on + strand, within H281DRAFT_02311 at 462.214 kb on + strand, within H281DRAFT_02311 at 462.215 kb on - strand, within H281DRAFT_02311 at 462.215 kb on - strand, within H281DRAFT_02311 at 462.215 kb on - strand, within H281DRAFT_02311 at 462.246 kb on + strand, within H281DRAFT_02311 at 462.247 kb on - strand, within H281DRAFT_02311 at 462.286 kb on + strand, within H281DRAFT_02311 at 462.287 kb on - strand, within H281DRAFT_02311 at 462.287 kb on - strand, within H281DRAFT_02311 at 462.343 kb on + strand, within H281DRAFT_02311 at 462.343 kb on + strand, within H281DRAFT_02311 at 462.343 kb on + strand, within H281DRAFT_02311 at 462.344 kb on - strand, within H281DRAFT_02311 at 462.368 kb on + strand, within H281DRAFT_02311 at 462.368 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.373 kb on + strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.374 kb on - strand, within H281DRAFT_02311 at 462.494 kb on + strand at 462.495 kb on - strand at 462.495 kb on - strand at 462.495 kb on - strand at 462.495 kb on - strand at 462.525 kb on + strand at 462.616 kb on + strand at 462.616 kb on + strand at 462.616 kb on + strand at 462.616 kb on + strand at 462.617 kb on - strand at 462.685 kb on + strand at 462.685 kb on + strand at 462.685 kb on + strand at 462.687 kb on + strand at 462.687 kb on + strand at 462.688 kb on - strand at 462.688 kb on - strand at 462.688 kb on - strand at 462.726 kb on + strand at 462.726 kb on + strand at 462.726 kb on + strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.727 kb on - strand at 462.770 kb on - strand at 462.830 kb on - strand, within H281DRAFT_02312 at 462.830 kb on - strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.831 kb on + strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.832 kb on - strand, within H281DRAFT_02312 at 462.847 kb on + strand, within H281DRAFT_02312 at 462.847 kb on + strand, within H281DRAFT_02312 at 462.847 kb on + strand, within H281DRAFT_02312 at 462.848 kb on - strand, within H281DRAFT_02312 at 462.899 kb on + strand, within H281DRAFT_02312 at 462.900 kb on - strand, within H281DRAFT_02312 at 462.900 kb on - strand, within H281DRAFT_02312 at 462.900 kb on - strand, within H281DRAFT_02312 at 462.934 kb on + strand, within H281DRAFT_02312 at 462.934 kb on + strand, within H281DRAFT_02312 at 462.934 kb on + strand, within H281DRAFT_02312 at 462.935 kb on - strand, within H281DRAFT_02312 at 462.935 kb on - strand, within H281DRAFT_02312 at 462.935 kb on - strand, within H281DRAFT_02312 at 463.055 kb on - strand, within H281DRAFT_02312 at 463.352 kb on + strand, within H281DRAFT_02312 at 463.352 kb on + strand, within H281DRAFT_02312 at 463.352 kb on + strand, within H281DRAFT_02312 at 463.353 kb on - strand, within H281DRAFT_02312 at 463.353 kb on - strand, within H281DRAFT_02312 at 463.353 kb on - strand at 463.406 kb on - strand, within H281DRAFT_02312 at 463.406 kb on - strand, within H281DRAFT_02312 at 463.406 kb on - strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.422 kb on + strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.423 kb on - strand, within H281DRAFT_02312 at 463.453 kb on - strand, within H281DRAFT_02312 at 463.453 kb on - strand, within H281DRAFT_02312 at 463.488 kb on + strand, within H281DRAFT_02312 at 463.489 kb on - strand, within H281DRAFT_02312 at 463.489 kb on - strand, within H281DRAFT_02312 at 463.489 kb on - strand, within H281DRAFT_02312
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 460,177 + -0.9 460,177 + +0.4 460,177 + -1.2 460,177 + -0.1 460,178 - +0.1 460,178 - -0.4 460,193 + +0.2 460,193 + +0.6 460,193 + -0.5 460,194 - -0.6 460,194 - -0.1 460,194 - +1.8 460,195 + +0.2 460,195 + -0.8 460,195 + +0.1 460,195 + +0.1 460,196 - +0.3 460,284 + -1.5 460,284 + +0.1 460,284 + -1.1 460,284 + -2.5 460,284 + +0.1 460,284 + -0.4 460,284 + +0.0 460,285 - +0.2 460,285 - -0.0 460,302 + -0.0 461,119 + +0.3 461,119 + +0.6 461,119 + -1.3 461,119 + +1.3 461,119 + -1.1 461,120 - -0.2 461,120 - +0.0 461,120 - +0.7 461,120 - +0.5 461,120 - +0.3 461,120 - -1.3 461,120 - -0.3 461,140 + -0.1 461,140 + -0.4 461,140 + -0.8 461,140 + -0.5 461,141 - +0.4 461,167 + +0.0 461,295 + H281DRAFT_02311 0.13 -0.5 461,295 + H281DRAFT_02311 0.13 +0.1 461,295 + H281DRAFT_02311 0.13 +0.2 461,296 - H281DRAFT_02311 0.13 +0.7 461,296 - H281DRAFT_02311 0.13 +3.3 461,296 - H281DRAFT_02311 0.13 -0.0 461,298 + H281DRAFT_02311 0.13 -1.5 461,363 + H281DRAFT_02311 0.18 +0.3 461,363 + H281DRAFT_02311 0.18 -0.9 461,363 + H281DRAFT_02311 0.18 -1.9 461,364 - H281DRAFT_02311 0.18 +0.4 461,364 - H281DRAFT_02311 0.18 -0.5 461,364 - H281DRAFT_02311 0.18 -0.0 461,470 + H281DRAFT_02311 0.26 +0.5 461,471 - H281DRAFT_02311 0.26 +0.4 461,493 - H281DRAFT_02311 0.27 -1.2 461,657 + H281DRAFT_02311 0.39 -0.7 461,657 + H281DRAFT_02311 0.39 -1.9 461,657 + H281DRAFT_02311 0.39 +0.3 461,689 + H281DRAFT_02311 0.41 +0.7 461,689 + H281DRAFT_02311 0.41 -0.5 461,689 + H281DRAFT_02311 0.41 +0.0 461,689 + H281DRAFT_02311 0.41 -0.3 461,689 + H281DRAFT_02311 0.41 +0.3 461,689 + H281DRAFT_02311 0.41 -0.6 461,690 - H281DRAFT_02311 0.41 +0.4 461,690 - H281DRAFT_02311 0.41 +0.3 461,690 - H281DRAFT_02311 0.41 +1.0 461,728 - -0.3 461,728 - H281DRAFT_02311 0.44 -0.6 461,728 - H281DRAFT_02311 0.44 +0.6 461,808 + H281DRAFT_02311 0.49 -0.6 461,808 + H281DRAFT_02311 0.49 -0.3 461,808 + H281DRAFT_02311 0.49 +0.5 461,809 - H281DRAFT_02311 0.50 +0.7 461,812 - H281DRAFT_02311 0.50 +0.3 461,837 + H281DRAFT_02311 0.52 +0.8 461,837 + H281DRAFT_02311 0.52 -0.8 461,837 + H281DRAFT_02311 0.52 +1.2 461,838 - H281DRAFT_02311 0.52 -0.4 461,838 - H281DRAFT_02311 0.52 -0.2 461,838 - H281DRAFT_02311 0.52 +0.8 461,838 - H281DRAFT_02311 0.52 -0.6 461,844 + H281DRAFT_02311 0.52 -0.2 461,844 + H281DRAFT_02311 0.52 +1.1 461,845 - H281DRAFT_02311 0.52 -0.3 461,845 - H281DRAFT_02311 0.52 -0.1 461,845 - H281DRAFT_02311 0.52 -0.2 461,852 + H281DRAFT_02311 0.53 -0.0 461,852 + H281DRAFT_02311 0.53 +0.3 461,852 + H281DRAFT_02311 0.53 +0.7 462,037 + H281DRAFT_02311 0.66 +0.3 462,037 + H281DRAFT_02311 0.66 +0.3 462,038 - H281DRAFT_02311 0.66 +0.4 462,038 - H281DRAFT_02311 0.66 -1.2 462,061 + H281DRAFT_02311 0.67 -0.2 462,061 + H281DRAFT_02311 0.67 -0.4 462,062 - +1.3 462,062 - H281DRAFT_02311 0.67 -0.4 462,062 - H281DRAFT_02311 0.67 -1.8 462,083 + H281DRAFT_02311 0.69 -0.3 462,083 + H281DRAFT_02311 0.69 +0.9 462,084 - H281DRAFT_02311 0.69 -0.1 462,186 - H281DRAFT_02311 0.76 +0.4 462,193 - H281DRAFT_02311 0.77 -0.6 462,214 + H281DRAFT_02311 0.78 +0.3 462,214 + H281DRAFT_02311 0.78 -0.4 462,214 + H281DRAFT_02311 0.78 +0.0 462,215 - H281DRAFT_02311 0.78 -0.7 462,215 - H281DRAFT_02311 0.78 -0.1 462,215 - H281DRAFT_02311 0.78 +0.1 462,246 + H281DRAFT_02311 0.80 -1.4 462,247 - H281DRAFT_02311 0.81 +0.2 462,286 + H281DRAFT_02311 0.83 +0.3 462,287 - H281DRAFT_02311 0.83 +0.2 462,287 - H281DRAFT_02311 0.83 +0.1 462,343 + H281DRAFT_02311 0.87 +0.2 462,343 + H281DRAFT_02311 0.87 +0.2 462,343 + H281DRAFT_02311 0.87 +0.3 462,344 - H281DRAFT_02311 0.87 +0.2 462,368 + H281DRAFT_02311 0.89 -0.4 462,368 + H281DRAFT_02311 0.89 -0.5 462,373 + H281DRAFT_02311 0.89 -0.3 462,373 + H281DRAFT_02311 0.89 +0.5 462,373 + H281DRAFT_02311 0.89 -0.1 462,373 + H281DRAFT_02311 0.89 -0.1 462,373 + H281DRAFT_02311 0.89 +0.5 462,373 + H281DRAFT_02311 0.89 +0.5 462,374 - H281DRAFT_02311 0.90 +0.2 462,374 - H281DRAFT_02311 0.90 -0.6 462,374 - H281DRAFT_02311 0.90 -0.3 462,374 - H281DRAFT_02311 0.90 -0.1 462,374 - H281DRAFT_02311 0.90 +0.8 462,374 - H281DRAFT_02311 0.90 +0.3 462,374 - H281DRAFT_02311 0.90 -0.5 462,374 - H281DRAFT_02311 0.90 +0.1 462,374 - +0.7 462,374 - H281DRAFT_02311 0.90 -1.6 462,374 - H281DRAFT_02311 0.90 +0.2 462,374 - H281DRAFT_02311 0.90 -0.5 462,374 - H281DRAFT_02311 0.90 -0.0 462,494 + +0.9 462,495 - -0.2 462,495 - +1.1 462,495 - +0.3 462,495 - -0.6 462,525 + +1.6 462,616 + +2.6 462,616 + +0.6 462,616 + +0.1 462,616 + -0.4 462,617 - +0.0 462,685 + -0.9 462,685 + +0.5 462,685 + +0.3 462,687 + -0.7 462,687 + -1.5 462,688 - -1.0 462,688 - +0.3 462,688 - -1.3 462,726 + -1.8 462,726 + -3.1 462,726 + -0.3 462,727 - -0.0 462,727 - +0.5 462,727 - -0.4 462,727 - -0.1 462,727 - -0.7 462,727 - +0.4 462,770 - +0.6 462,830 - H281DRAFT_02312 0.11 -0.6 462,830 - H281DRAFT_02312 0.11 +0.5 462,831 + H281DRAFT_02312 0.11 -1.2 462,831 + H281DRAFT_02312 0.11 -0.8 462,831 + H281DRAFT_02312 0.11 +1.3 462,831 + H281DRAFT_02312 0.11 -1.0 462,831 + H281DRAFT_02312 0.11 -0.3 462,832 - H281DRAFT_02312 0.11 -2.4 462,832 - H281DRAFT_02312 0.11 -1.7 462,832 - H281DRAFT_02312 0.11 -0.2 462,832 - H281DRAFT_02312 0.11 +0.5 462,832 - H281DRAFT_02312 0.11 -0.2 462,832 - H281DRAFT_02312 0.11 -0.3 462,832 - H281DRAFT_02312 0.11 +1.5 462,832 - H281DRAFT_02312 0.11 +0.1 462,832 - H281DRAFT_02312 0.11 -0.9 462,832 - H281DRAFT_02312 0.11 -0.6 462,847 + H281DRAFT_02312 0.12 -0.0 462,847 + H281DRAFT_02312 0.12 -0.2 462,847 + H281DRAFT_02312 0.12 -0.2 462,848 - H281DRAFT_02312 0.12 +0.3 462,899 + H281DRAFT_02312 0.14 +0.2 462,900 - H281DRAFT_02312 0.14 -1.4 462,900 - H281DRAFT_02312 0.14 -0.3 462,900 - H281DRAFT_02312 0.14 +0.0 462,934 + H281DRAFT_02312 0.15 -0.9 462,934 + H281DRAFT_02312 0.15 -0.5 462,934 + H281DRAFT_02312 0.15 -1.3 462,935 - H281DRAFT_02312 0.15 -0.1 462,935 - H281DRAFT_02312 0.15 -0.1 462,935 - H281DRAFT_02312 0.15 +2.5 463,055 - H281DRAFT_02312 0.20 -1.0 463,352 + H281DRAFT_02312 0.31 +0.1 463,352 + H281DRAFT_02312 0.31 -0.5 463,352 + H281DRAFT_02312 0.31 -1.0 463,353 - H281DRAFT_02312 0.31 -0.3 463,353 - H281DRAFT_02312 0.31 -0.2 463,353 - +4.1 463,406 - H281DRAFT_02312 0.33 -1.5 463,406 - H281DRAFT_02312 0.33 -0.2 463,406 - H281DRAFT_02312 0.33 +0.9 463,422 + H281DRAFT_02312 0.34 -0.2 463,422 + H281DRAFT_02312 0.34 +0.1 463,422 + H281DRAFT_02312 0.34 -0.4 463,422 + H281DRAFT_02312 0.34 +0.6 463,423 - H281DRAFT_02312 0.34 +0.1 463,423 - H281DRAFT_02312 0.34 -0.3 463,423 - H281DRAFT_02312 0.34 +0.5 463,423 - H281DRAFT_02312 0.34 -0.0 463,423 - H281DRAFT_02312 0.34 -0.3 463,423 - H281DRAFT_02312 0.34 +0.3 463,453 - H281DRAFT_02312 0.35 +0.3 463,453 - H281DRAFT_02312 0.35 -0.5 463,488 + H281DRAFT_02312 0.36 +0.9 463,489 - H281DRAFT_02312 0.36 +0.3 463,489 - H281DRAFT_02312 0.36 +0.1 463,489 - H281DRAFT_02312 0.36 -0.1
Or see this region's nucleotide sequence