Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01679

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01678 and H281DRAFT_01679 are separated by 157 nucleotidesH281DRAFT_01679 and H281DRAFT_01680 overlap by 4 nucleotides H281DRAFT_01678: H281DRAFT_01678 - Predicted dehydrogenase, at 561,748 to 562,800 _01678 H281DRAFT_01679: H281DRAFT_01679 - shikimate dehydrogenase (EC 1.1.1.25), at 562,958 to 563,791 _01679 H281DRAFT_01680: H281DRAFT_01680 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 563,788 to 565,011 _01680 Position (kb) 562 563 564Strain fitness (log2 ratio) -3 -2 -1 0 1at 561.974 kb on + strand, within H281DRAFT_01678at 562.031 kb on + strand, within H281DRAFT_01678at 562.049 kb on + strand, within H281DRAFT_01678at 562.049 kb on + strand, within H281DRAFT_01678at 562.325 kb on + strand, within H281DRAFT_01678at 562.746 kb on + strandat 562.801 kb on - strandat 562.922 kb on + strandat 563.582 kb on + strand, within H281DRAFT_01679at 563.691 kb on + strand, within H281DRAFT_01679at 563.749 kb on + strandat 564.174 kb on + strand, within H281DRAFT_01680at 564.175 kb on - strand, within H281DRAFT_01680at 564.734 kb on - strand, within H281DRAFT_01680

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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561,974 + H281DRAFT_01678 0.21 -0.3
562,031 + H281DRAFT_01678 0.27 -3.1
562,049 + H281DRAFT_01678 0.29 -0.4
562,049 + H281DRAFT_01678 0.29 +0.8
562,325 + H281DRAFT_01678 0.55 +0.6
562,746 + -0.2
562,801 - +1.2
562,922 + -0.1
563,582 + H281DRAFT_01679 0.75 -0.9
563,691 + H281DRAFT_01679 0.88 -0.7
563,749 + +0.1
564,174 + H281DRAFT_01680 0.32 +0.2
564,175 - H281DRAFT_01680 0.32 -1.2
564,734 - H281DRAFT_01680 0.77 -0.9

Or see this region's nucleotide sequence