Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01676 and H281DRAFT_01677 are separated by 102 nucleotides H281DRAFT_01677 and H281DRAFT_01678 are separated by 18 nucleotides H281DRAFT_01678 and H281DRAFT_01679 are separated by 157 nucleotides H281DRAFT_01679 and H281DRAFT_01680 overlap by 4 nucleotides
H281DRAFT_01676: H281DRAFT_01676 - transcriptional regulator, LysR family, at 560,284 to 561,189
_01676
H281DRAFT_01677: H281DRAFT_01677 - 3-dehydroquinate dehydratase, at 561,292 to 561,729
_01677
H281DRAFT_01678: H281DRAFT_01678 - Predicted dehydrogenase, at 561,748 to 562,800
_01678
H281DRAFT_01679: H281DRAFT_01679 - shikimate dehydrogenase (EC 1.1.1.25), at 562,958 to 563,791
_01679
H281DRAFT_01680: H281DRAFT_01680 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 563,788 to 565,011
_01680
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 561.022 kb on - strand, within H281DRAFT_01676 at 561.172 kb on + strand at 561.234 kb on - strand at 561.239 kb on + strand at 561.290 kb on + strand at 561.426 kb on + strand, within H281DRAFT_01677 at 561.483 kb on + strand, within H281DRAFT_01677 at 561.484 kb on - strand, within H281DRAFT_01677 at 561.484 kb on - strand, within H281DRAFT_01677 at 561.486 kb on - strand, within H281DRAFT_01677 at 561.529 kb on - strand, within H281DRAFT_01677 at 561.974 kb on + strand, within H281DRAFT_01678 at 562.031 kb on + strand, within H281DRAFT_01678 at 562.049 kb on + strand, within H281DRAFT_01678 at 562.049 kb on + strand, within H281DRAFT_01678 at 562.325 kb on + strand, within H281DRAFT_01678 at 562.746 kb on + strand at 562.801 kb on - strand at 562.922 kb on + strand at 563.582 kb on + strand, within H281DRAFT_01679 at 563.691 kb on + strand, within H281DRAFT_01679 at 563.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 561,022 - H281DRAFT_01676 0.81 -1.2 561,172 + -1.8 561,234 - +0.2 561,239 + +0.2 561,290 + -0.5 561,426 + H281DRAFT_01677 0.31 +0.6 561,483 + H281DRAFT_01677 0.44 -0.6 561,484 - H281DRAFT_01677 0.44 +0.0 561,484 - H281DRAFT_01677 0.44 +0.1 561,486 - H281DRAFT_01677 0.44 -1.2 561,529 - H281DRAFT_01677 0.54 +0.3 561,974 + H281DRAFT_01678 0.21 -0.3 562,031 + H281DRAFT_01678 0.27 -3.1 562,049 + H281DRAFT_01678 0.29 -0.4 562,049 + H281DRAFT_01678 0.29 +0.8 562,325 + H281DRAFT_01678 0.55 +0.6 562,746 + -0.2 562,801 - +1.2 562,922 + -0.1 563,582 + H281DRAFT_01679 0.75 -0.9 563,691 + H281DRAFT_01679 0.88 -0.7 563,749 + +0.1
Or see this region's nucleotide sequence