Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01323

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01322 and H281DRAFT_01323 are separated by 13 nucleotidesH281DRAFT_01323 and H281DRAFT_01324 are separated by 303 nucleotides H281DRAFT_01322: H281DRAFT_01322 - Predicted ATP-dependent carboligase, ATP-grasp superfamily, at 162,509 to 163,642 _01322 H281DRAFT_01323: H281DRAFT_01323 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, at 163,656 to 164,402 _01323 H281DRAFT_01324: H281DRAFT_01324 - formylmethanofuran dehydrogenase, subunit B, at 164,706 to 166,124 _01324 Position (kb) 163 164 165Strain fitness (log2 ratio) -2 -1 0 1at 162.724 kb on - strand, within H281DRAFT_01322at 163.818 kb on + strand, within H281DRAFT_01323at 163.819 kb on - strand, within H281DRAFT_01323at 163.819 kb on - strand, within H281DRAFT_01323at 164.084 kb on - strand, within H281DRAFT_01323at 164.208 kb on + strand, within H281DRAFT_01323at 164.400 kb on + strandat 164.401 kb on - strandat 164.478 kb on - strandat 164.626 kb on + strandat 164.627 kb on - strandat 164.693 kb on + strandat 164.812 kb on + strandat 165.057 kb on + strand, within H281DRAFT_01324at 165.058 kb on - strand, within H281DRAFT_01324at 165.197 kb on - strand, within H281DRAFT_01324

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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162,724 - H281DRAFT_01322 0.19 -0.3
163,818 + H281DRAFT_01323 0.22 +0.4
163,819 - H281DRAFT_01323 0.22 -0.3
163,819 - H281DRAFT_01323 0.22 +0.0
164,084 - H281DRAFT_01323 0.57 +0.2
164,208 + H281DRAFT_01323 0.74 -0.0
164,400 + -2.5
164,401 - -0.6
164,478 - -2.4
164,626 + +0.8
164,627 - +0.1
164,693 + -2.3
164,812 + -0.0
165,057 + H281DRAFT_01324 0.25 +0.0
165,058 - H281DRAFT_01324 0.25 -0.4
165,197 - H281DRAFT_01324 0.35 -0.8

Or see this region's nucleotide sequence