Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01280

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01279 and H281DRAFT_01280 are separated by 396 nucleotidesH281DRAFT_01280 and H281DRAFT_01281 are separated by 260 nucleotides H281DRAFT_01279: H281DRAFT_01279 - Nicotinamidase-related amidase, at 116,821 to 117,510 _01279 H281DRAFT_01280: H281DRAFT_01280 - TupA-like ATPgrasp, at 117,907 to 118,923 _01280 H281DRAFT_01281: H281DRAFT_01281 - Glycosyltransferases involved in cell wall biogenesis, at 119,184 to 120,185 _01281 Position (kb) 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2at 117.107 kb on + strand, within H281DRAFT_01279at 117.307 kb on - strand, within H281DRAFT_01279at 117.307 kb on - strand, within H281DRAFT_01279at 117.307 kb on - strand, within H281DRAFT_01279at 117.518 kb on + strandat 117.519 kb on - strandat 117.525 kb on + strandat 117.526 kb on - strandat 117.526 kb on - strandat 117.811 kb on + strandat 117.956 kb on + strandat 118.046 kb on + strand, within H281DRAFT_01280at 118.212 kb on - strand, within H281DRAFT_01280at 118.333 kb on + strand, within H281DRAFT_01280at 118.333 kb on + strand, within H281DRAFT_01280at 118.334 kb on - strand, within H281DRAFT_01280at 118.334 kb on - strand, within H281DRAFT_01280at 118.334 kb on - strand, within H281DRAFT_01280at 118.442 kb on - strand, within H281DRAFT_01280at 118.552 kb on - strand, within H281DRAFT_01280at 118.558 kb on + strand, within H281DRAFT_01280at 118.607 kb on + strand, within H281DRAFT_01280at 118.607 kb on + strand, within H281DRAFT_01280at 118.721 kb on + strand, within H281DRAFT_01280at 118.756 kb on + strand, within H281DRAFT_01280at 118.777 kb on + strand, within H281DRAFT_01280at 119.039 kb on + strandat 119.040 kb on - strandat 119.214 kb on + strandat 119.215 kb on - strandat 119.384 kb on - strand, within H281DRAFT_01281at 119.391 kb on + strand, within H281DRAFT_01281at 119.391 kb on + strand, within H281DRAFT_01281at 119.393 kb on + strand, within H281DRAFT_01281at 119.393 kb on + strand, within H281DRAFT_01281at 119.394 kb on - strand, within H281DRAFT_01281at 119.394 kb on - strand, within H281DRAFT_01281at 119.414 kb on - strand, within H281DRAFT_01281at 119.565 kb on + strand, within H281DRAFT_01281at 119.565 kb on + strand, within H281DRAFT_01281at 119.565 kb on + strand, within H281DRAFT_01281at 119.565 kb on + strand, within H281DRAFT_01281at 119.566 kb on - strand, within H281DRAFT_01281at 119.566 kb on - strand, within H281DRAFT_01281at 119.566 kb on - strand, within H281DRAFT_01281at 119.566 kb on - strand, within H281DRAFT_01281at 119.570 kb on - strand, within H281DRAFT_01281at 119.625 kb on + strand, within H281DRAFT_01281at 119.625 kb on + strand, within H281DRAFT_01281at 119.626 kb on - strand, within H281DRAFT_01281at 119.680 kb on + strand, within H281DRAFT_01281at 119.681 kb on - strand, within H281DRAFT_01281

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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117,107 + H281DRAFT_01279 0.41 -0.7
117,307 - H281DRAFT_01279 0.70 +0.0
117,307 - H281DRAFT_01279 0.70 -2.0
117,307 - H281DRAFT_01279 0.70 -1.9
117,518 + +0.8
117,519 - +0.4
117,525 + +0.6
117,526 - +0.4
117,526 - +0.1
117,811 + -0.5
117,956 + +0.2
118,046 + H281DRAFT_01280 0.14 +0.6
118,212 - H281DRAFT_01280 0.30 -0.1
118,333 + H281DRAFT_01280 0.42 +0.8
118,333 + H281DRAFT_01280 0.42 -0.6
118,334 - H281DRAFT_01280 0.42 +0.3
118,334 - H281DRAFT_01280 0.42 -0.3
118,334 - H281DRAFT_01280 0.42 -0.8
118,442 - H281DRAFT_01280 0.53 -1.3
118,552 - H281DRAFT_01280 0.63 -0.5
118,558 + H281DRAFT_01280 0.64 +0.1
118,607 + H281DRAFT_01280 0.69 +0.5
118,607 + H281DRAFT_01280 0.69 +0.5
118,721 + H281DRAFT_01280 0.80 -1.3
118,756 + H281DRAFT_01280 0.83 +0.2
118,777 + H281DRAFT_01280 0.86 -0.7
119,039 + -0.8
119,040 - +0.4
119,214 + -0.2
119,215 - -0.4
119,384 - H281DRAFT_01281 0.20 +0.2
119,391 + H281DRAFT_01281 0.21 -0.1
119,391 + H281DRAFT_01281 0.21 +0.0
119,393 + H281DRAFT_01281 0.21 +0.8
119,393 + H281DRAFT_01281 0.21 -0.4
119,394 - H281DRAFT_01281 0.21 -0.7
119,394 - H281DRAFT_01281 0.21 +0.2
119,414 - H281DRAFT_01281 0.23 -0.3
119,565 + H281DRAFT_01281 0.38 -1.0
119,565 + H281DRAFT_01281 0.38 +0.8
119,565 + H281DRAFT_01281 0.38 -0.6
119,565 + H281DRAFT_01281 0.38 +0.1
119,566 - H281DRAFT_01281 0.38 +0.0
119,566 - H281DRAFT_01281 0.38 -0.1
119,566 - H281DRAFT_01281 0.38 +0.2
119,566 - H281DRAFT_01281 0.38 +0.4
119,570 - H281DRAFT_01281 0.39 -0.7
119,625 + H281DRAFT_01281 0.44 +0.3
119,625 + H281DRAFT_01281 0.44 -0.5
119,626 - H281DRAFT_01281 0.44 -0.5
119,680 + H281DRAFT_01281 0.50 +0.8
119,681 - H281DRAFT_01281 0.50 +2.0

Or see this region's nucleotide sequence