Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01276

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01275 and H281DRAFT_01276 are separated by 422 nucleotidesH281DRAFT_01276 and H281DRAFT_01277 are separated by 77 nucleotides H281DRAFT_01275: H281DRAFT_01275 - MFS transporter, AAHS family, 3-hydroxyphenylpropionic acid transporter, at 110,736 to 111,977 _01275 H281DRAFT_01276: H281DRAFT_01276 - vanillin synthase /trans-feruloyl-CoA hydratase, at 112,400 to 113,236 _01276 H281DRAFT_01277: H281DRAFT_01277 - vanillin dehydrogenase, at 113,314 to 114,765 _01277 Position (kb) 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1at 111.433 kb on + strand, within H281DRAFT_01275at 111.517 kb on + strandat 111.518 kb on - strand, within H281DRAFT_01275at 112.047 kb on - strandat 112.163 kb on - strandat 112.220 kb on + strandat 112.410 kb on - strandat 112.623 kb on - strand, within H281DRAFT_01276at 112.907 kb on + strand, within H281DRAFT_01276at 112.908 kb on - strand, within H281DRAFT_01276at 113.109 kb on - strand, within H281DRAFT_01276at 113.220 kb on - strandat 113.221 kb on + strandat 113.221 kb on + strandat 113.246 kb on - strandat 113.324 kb on + strandat 113.329 kb on - strandat 113.742 kb on - strand, within H281DRAFT_01277

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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111,433 + H281DRAFT_01275 0.56 -0.4
111,517 + +1.4
111,518 - H281DRAFT_01275 0.63 -0.4
112,047 - -0.1
112,163 - -0.6
112,220 + +1.4
112,410 - +0.1
112,623 - H281DRAFT_01276 0.27 -3.6
112,907 + H281DRAFT_01276 0.61 -0.8
112,908 - H281DRAFT_01276 0.61 -1.6
113,109 - H281DRAFT_01276 0.85 -0.0
113,220 - -0.3
113,221 + +0.9
113,221 + +0.1
113,246 - -0.1
113,324 + +1.6
113,329 - -0.4
113,742 - H281DRAFT_01277 0.29 +0.1

Or see this region's nucleotide sequence