Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01162

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01161 and H281DRAFT_01162 are separated by 476 nucleotidesH281DRAFT_01162 and H281DRAFT_01163 are separated by 54 nucleotidesH281DRAFT_01163 and H281DRAFT_01164 are separated by 83 nucleotidesH281DRAFT_01164 and H281DRAFT_01165 are separated by 120 nucleotides H281DRAFT_01161: H281DRAFT_01161 - cytochrome b561, at 1,310,730 to 1,311,284 _01161 H281DRAFT_01162: H281DRAFT_01162 - hypothetical protein, at 1,311,761 to 1,311,883 _01162 H281DRAFT_01163: H281DRAFT_01163 - hypothetical protein, at 1,311,938 to 1,312,306 _01163 H281DRAFT_01164: H281DRAFT_01164 - hypothetical protein, at 1,312,390 to 1,312,659 _01164 H281DRAFT_01165: H281DRAFT_01165 - hypothetical protein, at 1,312,780 to 1,313,031 _01165 Position (kb) 1311 1312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1310.834 kb on - strand, within H281DRAFT_01161at 1310.842 kb on - strand, within H281DRAFT_01161at 1311.175 kb on - strand, within H281DRAFT_01161at 1311.235 kb on + strandat 1311.346 kb on - strandat 1311.893 kb on - strandat 1311.918 kb on - strandat 1312.004 kb on - strand, within H281DRAFT_01163at 1312.103 kb on + strand, within H281DRAFT_01163at 1312.160 kb on + strand, within H281DRAFT_01163at 1312.161 kb on - strand, within H281DRAFT_01163at 1312.723 kb on - strandat 1312.821 kb on + strand, within H281DRAFT_01165at 1312.882 kb on - strand, within H281DRAFT_01165

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,310,834 - H281DRAFT_01161 0.19 -0.1
1,310,842 - H281DRAFT_01161 0.20 +0.6
1,311,175 - H281DRAFT_01161 0.80 -0.4
1,311,235 + -0.2
1,311,346 - +1.0
1,311,893 - -0.1
1,311,918 - +0.2
1,312,004 - H281DRAFT_01163 0.18 +0.5
1,312,103 + H281DRAFT_01163 0.45 -3.8
1,312,160 + H281DRAFT_01163 0.60 -1.5
1,312,161 - H281DRAFT_01163 0.60 +0.6
1,312,723 - -0.0
1,312,821 + H281DRAFT_01165 0.16 -2.6
1,312,882 - H281DRAFT_01165 0.40 -0.9

Or see this region's nucleotide sequence